Pectobacterium cacticida: OI450_08225
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Entry
OI450_08225 CDS
T08693
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcac
Pectobacterium cacticida
Pathway
pcac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OI450_08225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcac03400
]
OI450_08225 (mfd)
Enzymes [BR:
pcac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OI450_08225 (mfd)
DNA repair and recombination proteins [BR:
pcac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OI450_08225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UYX08318
LinkDB
All DBs
Position
complement(1741811..1745263)
Genome browser
AA seq
1150 aa
AA seq
DB search
MMPENYRYSLPAKPGEQRLLGQLTGAACAVECAEIVTRHAGLVVLIAPDRQNALRLRDEI
QQFTDQPVTTLPDWETLPYDSFSPHQDIISTRLSTLYHLPNMTGGILILPVNTLMQRVCP
HRFLHGHALVLQKGQHLARDTLRAQLEQAGYRSVDQVMEHGEYATRGALLDLYPMGSEEP
YRIDFFDDEIDSLRLFDVDTQRTLAEVPRINLLPAHEFPTDKAAIELFRSQWREQFDVRR
DAEHLYQQVSKSVWPAGIEYWQPLFFAEPLPSLFSYFPDHTLIVNTGDIEQHAERFWQDI
QQRFESRRVDPMRPLLPPESLWLRVDGLFSALKAWPRVQLRTDSLPDKAANVNLAYQPLP
ALAIQHQQKSPLDALRRFVETFDGQIIFSVESEGRRETLQELLARIKISPTSISTLEQAQ
TRGTYLIIGASEHGFIDTLRQRALICESDLLGERVNRRRQDNRRTINTDTLIRNLAELRP
GQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADEN
APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAQSGFAFKHDKTQYQLFCESFPF
ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT
LLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGTHKLLQSDVR
WRDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP
PARRLAVKTFVREYDHLVVREAILREILRGGQVYYLYNDVENIEKATQRLAELVPEARIA
IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL
RGRVGRSHHQAYAYLLTPNPKAMSADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL
GDDQSGQMTSVGFSLYMELLESAVDALKAGREPSLEDLINSQTDVELRLPALLPEDFIPD
VNTRLSLYKRIASAKTAAELDELKVELIDRFGLLPDASRHLLQIAALRQQAQALGIRRIE
GNEKGGFIEFSEQNRVDPSHLIGLLQRDPGTYRLDGPTRLKFIKDLSDRPQRIAFIGSLL
EDMAQHTLAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgaaaattaccgttattcgctgcccgcaaaacccggtgagcagcgcctgctt
ggccagttaaccggcgcggcctgcgccgttgagtgtgcagagatcgttacacgccacgcc
ggtctggtggtgcttatcgcaccagacagacaaaatgcactgcgattgcgcgacgagata
cagcagtttactgaccaacctgtcaccaccttgcctgattgggaaacgttgccctacgat
agcttttccccgcatcaagacattatttcaactcgcctgtccacgctctaccacttgccc
aacatgacgggcggcattctcatcctgccggtcaacacactgatgcagcgcgtttgcccg
caccgttttttgcacggccacgcgctggtgctgcaaaaaggccagcatctcgcgcgcgat
acgctacgtgcgcagttggagcaggcgggctatcgtagcgtcgatcaggtgatggagcac
ggcgagtatgccacgcgcggcgcactgttagacctgtatcccatgggaagcgaagagccc
tatcgcatcgatttctttgacgacgagatcgacagcctgagactattcgatgtcgatacg
cagcgcacgctggccgaagtgccccgaatcaatctgctaccggctcacgaatttccgacc
gataaagccgccattgagcttttccgcagccagtggcgcgagcagttcgacgtccgacgc
gatgccgagcatctataccaacaggttagcaaaagcgtctggccggcggggatcgagtat
tggcaaccgcttttctttgccgagccgttaccgtcactcttcagctactttcccgaccac
acactgatcgtcaacacgggcgatattgaacagcacgccgaacgcttctggcaggatatc
cagcaacgttttgagagccgccgcgtcgatcctatgcggcctttattgccgccggagtca
ctatggttgcgcgtagatgggttattttcggcgctgaaagcgtggccacgagtgcagttg
agaaccgactcgctgccagataaagcggccaacgtgaatctggcataccagccgctcccc
gcgctggcaatccagcatcagcaaaaatctccgctggatgcgttacgccgttttgtcgaa
acgttcgacggccagatcattttctcggtcgagagcgaaggccgccgcgaaacgctgcaa
gaattgctggcacgcatcaaaataagccctacgtctatcagtacgctagagcaggctcag
acacgcgggacctatctgattatcggcgccagcgaacacggttttatcgatacactgcgc
cagcgcgcgttgatctgcgaaagcgatctgttgggcgaacgcgttaatcgccgtcgacag
gataatcgccgcacgatcaataccgatacgctgattcgtaatctggcagagttgcgccca
gggcaacctgtcgtccatctcgaacacggcgttggccgctatgccgggttaaccacgctg
gaagcgggcggcattaaggccgaatacctgattttgacctatgcaggggaagacaagctc
tatgtgcccgtgtcttcactgcatttgatcagccgctatgcaggcggtgccgatgagaat
gccccgctgcataaattagggggtgatgcctggtcgcgcgcgcgccaaaaggcggcagaa
aaagtgcgcgatgttgccgcggaattgctggatatttatgcccagcgcgcggcgcaaagc
gggtttgcctttaagcatgataaaacgcagtaccagctcttctgcgaaagtttccccttc
gaaacgacccccgatcaggcgcaggcgatcaatgccgtcctgagcgacatgtgccagccg
ctggcgatggatcgtctggtgtgcggcgatgtcggctttggtaaaaccgaagtcgcgatg
cgtgcggcgtttctcgcagtggaaaaccataagcaggtagccgttttggtgccgacgacg
ctgttggcgcaacaacatttcgacaactttcgcgatcgcttcgccaactggccggtgaag
atagaaatgatttcacgctttcgcagcgcacgcgagcaaacgcaagtgctggaggagacg
caggagggcaaagtcgacattctcatcggcacccataagctgttacagagcgacgtgcgc
tggcgcgatttagggctgctgatcgttgatgaagaacaccgcttcggcgtgcgccacaaa
gagcgcattaaagcgatgcgggccaacgtcgatatcctgaccctcaccgctacgccaatt
ccgcgcacgctgaatatggccatgagcggcatgcgcgatctgtcgattatcgccacgccg
ccggcgcgtcgtttggcagtcaaaacctttgtgcgggaatatgatcacctggtggtgcgc
gaagctattctgcgcgaaattctgcgcggcgggcaggtgtattacctctataacgatgtc
gaaaatatcgagaaggcgactcagcggctggcggaactggtgccagaagcccgcatcgcg
atcggtcatggacaaatgcgggaacgtgaactggaacgggtgatgaacgacttccatcac
cagcgttttaacgtgttggtgtgtaccaccatcatcgaaacggggatcgatattcccagc
gccaataccatcatcatcgaacgcgccgatcacttcgggctagctcagcttcatcaacta
cgcgggcgtgtcggccgctcacatcatcaggcatacgcctacctgctaacgccgaatcca
aaagcgatgagtgccgatgcgcacaaacgtttggaagcgatcgcctcgctggaagatctt
ggcgctggctttgcgctggcgacgcacgatctggagattcgcggagcgggtgaactgctc
ggcgacgatcagagcggtcagatgaccagcgtcggtttctcgctctatatggaactgctg
gaaagcgcggtcgacgcgttaaaggcgggacgcgaaccgtcattggaagatctgatcaac
agccagacggatgttgaactgcgtctgcccgcgttgttgcctgaggatttcatccctgac
gtgaatacgcgactgtcgttatacaagcgcatcgccagcgccaaaaccgccgccgagcta
gacgaattaaaggttgagctgattgaccgcttcggcctccttcccgatgccagccgccat
ctattacagatcgccgccctacgccagcaggcacaagcgctgggtatccgccgtattgaa
ggcaacgagaaagggggttttatcgaattcagcgagcaaaaccgcgtcgatccctcccat
cttatcggtctgctacagcgcgatccgggcacctatcgccttgatggcccaacccgtctg
aaattcataaaagatttgagcgaccggccacagcgcatcgcatttatcggctcactgttg
gaggatatggcgcagcatacgctggcagcctga
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