Physeter catodon (sperm whale): 102975530
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Entry
102975530 CDS
T06011
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102975530 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcad03400
]
102975530 (LIG4)
Enzymes [BR:
pcad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102975530 (LIG4)
DNA repair and recombination proteins [BR:
pcad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102975530 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Meiotic_rec114
Motif
Other DBs
NCBI-GeneID:
102975530
NCBI-ProteinID:
XP_007125253
Ensembl:
ENSPCTG00005018565
UniProt:
A0A2Y9FL30
LinkDB
All DBs
Position
13:complement(77702207..77709710)
Genome browser
AA seq
911 aa
AA seq
DB search
MTASQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFKEFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPTGTRG
DAGDFALIAYFVLKPRCLQKGSLTIQQVNDILDSIAINNSAQRKDLVKKSLLQLITQSSA
LEQKWLIRMIVKDLKLGFSQQTVFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLATIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYRYFSRNGYNYED
QFGSSPQEGSLTPFIHNAFKTDVQNCILDGEMMAYSPNTQTFMQKGNKFDIKRMVEDSDL
HACYCVFDVLMVNDKKLGQETLRKRYEILNSVFTPIPGRIEIVQKTQAHTKKEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVSEKPPSGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHKKSPPSCILC
GTEKPEVYIEPWNSVIVQVKATEIVPSAMYKTGCTLRFPRIEKIRENKEWHECTSLEDLE
QLRGKASGKLASKHLFVGDDDEPQEKKRKAAPKMKKVIGIIEHLKAPNLSNINKVSNIFE
DVEFCVMSGTNSHPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIISSDKHDV
VKPEWLLECLETKSCVPWQPRFMIHMCPSTKQHFAREYDCYGDSYFVDTDLNQLKEVFSG
IKNAGEQTPREMGPVIADLEHRYSWDNTPLSMFRHHTVYLDLYTVINDLSTKIEAARLAI
TALELQFHGANVVSCLAEGVSHVIIGEDQSRVADFKAFRRTLKRKFKILQERWVTESIDK
SELQEENQYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgactgcctcacaaacttcacagactgttgcatctcacgttccttttgcagatttatgt
tcaactttagaacgaatacagaaaagtaaaggacgtgcagaaaaaatcagacacttcaaa
gaatttttagattcttggagaaagtttcatgatgcccttcataagaaccaaaaagatgtc
acagattctttttatccagccatgagacttattcttcctcagctggaaagagagagaatg
gcctatggcatcaaagaaactatgcttgctaagctttatattgaattgcttaacctacct
cgagaaggaaaagatgccctcaaacttctaaactacagaacacctactggaactcgtgga
gatgctggagactttgcgctgattgcatactttgtgttgaaacccagatgtttacagaag
ggaagtttaaccatacagcaagtaaatgacattttagactccattgccatcaataattct
gcccaaaggaaggacctagtaaagaagagtcttcttcagcttataactcagagttcagca
cttgaacaaaagtggctgatacggatgattgtaaaggacttgaagcttggttttagtcag
caaactgtattttctgtttttcataatgatgctgctgagttgcataatgtcaccacagat
ctggaaaaggtctgtaggcaactgcatgatccttcagttggactcagtgacatttctatc
actttgttctctgcctttaaacccatgctggccactatagcagatatcgagcgaattgag
aaggacatgaaacaccagagtttctacatcgaaaccaagctagacggtgagcgtatgcag
atgcacaaggatggggacgtgtatcggtacttttcccgcaatggctataactatgaggat
cagtttggctcttccccacaggaaggttcccttacaccattcatccataatgcattcaaa
acagatgtgcaaaactgcatcctcgatggggagatgatggcctacagccctaatacacag
acttttatgcaaaaggggaataagtttgatattaaaagaatggtagaagattctgatctg
cacgcttgttactgtgtttttgatgtattgatggttaatgataaaaagctaggacaggag
acactgagaaagaggtatgaaattcttaatagtgtttttacaccaataccaggtagaata
gaaatagtgcaaaaaacacaagctcatactaagaaagaagtaattgatgccttgaatgaa
gcaatagataaaagagaagaggggatcatgataaaacatcctctgtccatttacaagcca
gataaaagaggtgaaggatggttaaaaattaaaccagagtatgtaaatgggctgatggat
gaactggacatcttaatcgtggggggctactgggggaaaggttcccggggtggaatgatg
tctcattttttgtgtgcggtgtcggagaaacccccttctggcgaaaaaccatcagtgttt
catactctctgtcgcgttggctcaggttacaccatgaaagaactgtatgacctgggtttg
aagctggccaaacactggaagccttttcataagaaatctccaccaagttgcattttatgt
ggaacagagaagccagaggtctacatcgaaccttggaattcggtcattgttcaggttaag
gccacagagattgtccccagtgctatgtataaaactggctgcacgttgcgttttccacga
attgagaagataagagaaaacaaagaatggcatgaatgtacatctctggaggatttagaa
caacttcgagggaaagcctccggaaagcttgcgtctaaacacctttttgtgggtgatgat
gatgaaccacaagaaaaaaagcggaaagctgccccaaagatgaagaaagttattggaatt
attgagcacctaaaagcacccaacctttctaacataaacaaagtttctaatatatttgaa
gatgtggagttttgtgtcatgagtggaacaaacagccatccaaagcctgatctggagaat
agaatcgcagaatttggtggttacatagtccaaaatccaggcccagacacatactgtgtg
attgcagggtctgagaacattcgagtgaaaaacatcatctcttctgataaacacgatgtt
gtcaagccagagtggctgttagagtgtttagagaccaaaagctgtgtgccgtggcagcct
cgcttcatgatccacatgtgcccatcaacaaaacagcactttgctcgggaatacgactgc
tacggggatagttactttgtcgatacagatttgaaccaactgaaggaagtgttctcagga
attaaaaatgctggtgaacagactcctagggaaatgggtcctgtgattgccgatttggaa
caccggtattcctgggacaacactcctcttagcatgtttcgacaccacaccgtttatttg
gacttgtatactgttattaatgacttaagtactaaaatcgaggcggcaagattagctatc
acagccctggagcttcaatttcatggagcaaatgtagtgtcatgcttagctgagggagtg
tctcatgtcatcattggggaggatcagagtcgggttgcagactttaaagcttttcgaaga
actcttaagagaaagtttaaaatcctacaagaacgttgggtaactgaatcaatagacaag
agtgaattacaggaggaaaatcaatatttggtttga
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