Physeter catodon (sperm whale): 102977156
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Entry
102977156 CDS
T06011
Symbol
RORA
Name
(RefSeq) nuclear receptor ROR-alpha isoform X6
KO
K08532
RAR-related orphan receptor alpha
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad04659
Th17 cell differentiation
pcad04710
Circadian rhythm
pcad05017
Spinocerebellar ataxia
pcad05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
102977156 (RORA)
09159 Environmental adaptation
04710 Circadian rhythm
102977156 (RORA)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
102977156 (RORA)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
102977156 (RORA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcad03000
]
102977156 (RORA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pcad03310
]
102977156 (RORA)
Transcription factors [BR:
pcad03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
102977156 (RORA)
Nuclear receptors [BR:
pcad03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
102977156 (RORA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
102977156
NCBI-ProteinID:
XP_023984590
Ensembl:
ENSPCTG00005009731
UniProt:
A0A2Y9T725
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All DBs
Position
11:complement(53629647..54371505)
Genome browser
AA seq
468 aa
AA seq
DB search
MMYFVIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNC
LIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQ
PGEAEPLTPTYSISANGLTELHDDLSSYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD
INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL
QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL
LKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHL
TEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVS
TLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgatgtattttgtgatcgcagcgatgaaagctcaaattgaaattattccatgcaagatc
tgtggagacaaatcatcaggaatccattatggtgtcattacatgtgaaggctgcaagggc
tttttcaggagaagtcagcaaagcaatgccacctactcctgtcctcgtcagaagaactgt
ttgattgatcgaaccagtagaaaccgctgccagcactgtcgattacagaaatgccttgcc
gtggggatgtctcgagatgctgtaaaatttggccgcatgtcgaaaaagcaacgagacagc
ttgtacgcagaagtacagaaacaccggatgcagcagcagcagcgagaccaccaacagcag
cctggagaggccgagccgctgactcccacctacagcatctcggccaacgggcttacggag
cttcacgacgacctcagcagctacatcgacgggcacacccccgagggcagcaaggcagac
tctgccgtcagcagcttctacctggacatacagccttccccggaccagtcaggtcttgat
atcaacggaatcaaaccagaaccaatatgtgactacacaccagcatcaggcttctttccc
tactgctctttcaccaatggagagacgtccccaactgtgtccatggcagaactagaacac
cttgcacagaatatatctaaatcacatctggaaacttgccaatacttgagagaagagctc
cagcagataacgtggcagacctttctgcaggaggagattgagaattaccaaaacaagcag
cgggaggtaatgtggcaattgtgtgccatcaaaattacagaagctatacagtatgtggtg
gagtttgccaaacgcattgatggatttatggaactgtgtcaaaacgatcaaattgtgctt
ctcaaagcaggttctctggaggtggtatttatcagaatgtgccgtgcctttgactctcag
aacaataccgtgtactttgatgggaaatatgctagccccgacgtcttcaaatccttaggt
tgtgaagactttattagctttgtatttgaatttggaaagagtttatgttctatgcacctg
actgaagatgaaattgcattgttttctgcatttgtcctgatgtcagcagatcgctcatgg
ctacaggaaaaggtaaaaattgaaaagctgcaacagaaaattcagctagctcttcagcac
gtcctacagaagaatcaccgagaagatggaatactaacgaagttaatatgcaaggtgtct
acattaagagccttatgtggacgacatacagaaaagctaatggcgtttaaagcaatatac
ccagacattgtgcgacttcattttcctccattatacaaggagttgttcacttcagaattt
gagccagcaatgcagattgatgggtaa
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