Physeter catodon (sperm whale): 102986844
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Entry
102986844 CDS
T06011
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad03022
Basal transcription factors
pcad03420
Nucleotide excision repair
pcad05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102986844
09124 Replication and repair
03420 Nucleotide excision repair
102986844
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
102986844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcad03021
]
102986844
03400 DNA repair and recombination proteins [BR:
pcad03400
]
102986844
Transcription machinery [BR:
pcad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
102986844
DNA repair and recombination proteins [BR:
pcad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
102986844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
VWA_3
Motif
Other DBs
NCBI-GeneID:
102986844
NCBI-ProteinID:
XP_007130022
Ensembl:
ENSPCTG00005000863
ENSPCTG00005000909
UniProt:
A0A2Y9FT26
LinkDB
All DBs
Position
8:72722098..72791305
Genome browser
AA seq
395 aa
AA seq
DB search
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVQLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
SGNPRKHIISLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS
NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQDIPLEEHNGERFCYACQGELKDQHVYVC
TVCQNVFCVDCDIFVHDSLHCCPGCIHKIPAPSAI
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagagcctgaaagaactaagcgatgggaaggaggctatgaaagaacatgggag
attcttaaagaagatgaatcaggatcacttaaagctacaatagaagacattctcttcaaa
gcaaagagaaaaagggtatttgagcaccatggacaagttcaacttggaatgatgcgtcat
ctttatgtggtagtagatggatcaagaacaatggaagaccaggatttaaagccaaataga
ctgacgtgtactttaaagttgttggaatacttcgtagaggaatattttgatcaaaatcct
attagtcagattggaataattgtaacaaagagtaaaagagctgaaaaactgactgaactc
tcaggaaacccaaggaaacacataatatctttgaagaaagctgtagatatgacttgccat
ggagagccatctctttataactccttaagtatggctatgcagactctaaaacacatgccc
ggacatacaagtagagaagtcctaatcatctttagcagtctcacaacctgtgatccatct
aatatctatgatctaatcaagaccctaaaggcagctaaaattagagtgtctgttattgga
ttgtctgcagaggttcgggtttgcactgtgcttgctcgtgaaactggtggcacataccat
gttattttagatgaaagccattacaaagaattgctgacacatcatgttagtcctcctcct
gctagctcaagctctgaatgctcacttattcgtatgggatttcctcagcataccattgct
tctctgtctgatcaagatgcaaagccctctttcagtatggcgcatctggatagcaacact
gagccaggacttacattaggaggctatttctgcccacagtgtcgggcaaagtactgtgag
cttcctgttgaatgtaaaatctgtggtctaactttggtgtctgctccccacttggcacgg
tcttaccatcacttatttcctttggatgcttttcaagatattcccctggaagaacataat
ggagaaagattttgttatgcctgtcagggggaattgaaagaccaacatgtctatgtttgc
actgtgtgccaaaatgttttttgtgtggactgtgatatttttgttcatgactctctccat
tgttgtcctggctgtattcataagattccagctccttcagctatttga
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