Physeter catodon (sperm whale): 102988826
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Entry
102988826 CDS
T06011
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad03013
Nucleocytoplasmic transport
pcad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102988826 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
102988826 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
102988826 (THOC1)
03041 Spliceosome [BR:
pcad03041
]
102988826 (THOC1)
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
102988826 (THOC1)
Spliceosome [BR:
pcad03041
]
Complex C
Other components
EJC/TREX
102988826 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102988826 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
HsdM_N
Motif
Other DBs
NCBI-GeneID:
102988826
NCBI-ProteinID:
XP_023976889
Ensembl:
ENSPCTG00005018960
UniProt:
A0A2Y9SME5
LinkDB
All DBs
Position
19:35188339..35239060
Genome browser
AA seq
657 aa
AA seq
DB search
MSPTPPLFSLPEARTRFTKSTREALNSKNIKPLLNTFSQLPGSENEKKCTLDQAFRGVLE
EEIINHSSCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHMEDREEGMDVEEGEMGDDEVPTTCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRVVRKRTAPE
DFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMV
ENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEDNDALLKENESPDVRRDKPVTGDQIEVFASKLGEQWKILAPYLEMKDSEIR
QIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLTNDNETNS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctacgccgccgctcttcagtttgcccgaagcgcggacgcggtttacgaaatct
accagagaggccctgaacagcaaaaatatcaagcccttgttgaatacgttcagccagtta
cctggaagtgaaaatgaaaaaaaatgtacccttgaccaagcttttagaggtgttctagaa
gaagaaattataaatcattcatcatgtgaaaacgttttagctattatttctcttgctatt
gggggagttactgaaggtatttgtacagcatctacaccttttgtattgttgggagatgtt
ttggattgccttcctttggatcagtgtgacacaatattcacttttgtggaaaaaaatgtt
gctacttggaaatcaaatacattctattctgctgggaagaattatttactacgtatgtgc
aatgatctcttacgaagattatcaaaatcccagaatacagtcttctgtggacgaattcag
ctctttttggccagacttttccctttatctgagaagtcaggtcttaacttgcagagtcag
tttaatctggaaaatgtcactgttttcaataccaatgagcaggaaagcacattgggtcaa
aagcacatggaggacagagaagaaggaatggatgtggaagaaggtgaaatgggggatgat
gaagttccaacaacttgctccattccaattgattacaacctgtaccgaaaattttggtca
cttcaggattactttaggaaccctgtgcaatgctatgagaaaatttcatggaaaactttt
ctcaagtattctgaagaagttctagctgtttttaagagttataaattagatgatactcag
gcctcaaggaaaaagatggaagaattgaaaacaggaggagagcatgtatattttgcgaag
tttttaacaagtgaaaagctgatggatttacaactgagcgacagtaactttcgtcgacac
atcctgttgcagtatctcattttattccagtatctcaaggggcaggtcaaatttaaaagt
tcaaactatgttttaactgatgagcaatcactctggattgaagatactacaaagtcagtt
tatcaactactatctgaaaacccccctgatggagaaagattttcaaagatggtagagcat
atattaaacactgaagaaaactggaactcatggaaaaatgaaggctgcccaagttttgtg
aaagaaagaacatcagataccaagccgacaagagtagtacggaagagaacggctccagag
gacttcctagggaaaggacccaacaaaaaaattctgatgggaaatgaggagttaacaagg
ctttggaatctctgtcctgataatatggaagcctgtaaatcagagacaagggaatatatg
ccaactttggaggaattctttgaagaagccattgaacaggcagaccctgaaaacatggtt
gaaaatgaatacaaggctgtgaacaattctaattatggttggagagccctgagactatta
gcacggagaagccctcacttctttcagccaaccaaccagcagtttaaaagtttgccagaa
tatctcgaaaacatggtaataaagctagccaaggaattaccacctccttctgaagaaata
aaaacaggtgaggatgaagatgaggaagataatgatgctttactgaaggaaaatgaaagt
cctgatgttcggcgagacaaacctgtaacaggggaccaaatagaggtatttgccagcaaa
ctgggtgaacaatggaagattctggctccctacttggaaatgaaagactcagaaattaga
cagattgagtgtgacagtgaagacatgaagatgagagctaagcagctgctagtcgcctgg
caggatcaggagggagtgcacgcgacacctgagaacctgatcaatgcactcaacaagtct
gggttaagtgaccttgcagaaagtctaactaatgacaatgagacaaatagttag
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