Paraburkholderia caffeinilytica: DSC91_006936
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Entry
DSC91_006936 CDS
T06448
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSC91_006936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcaf03019
]
DSC91_006936
03016 Transfer RNA biogenesis [BR:
pcaf03016
]
DSC91_006936
Enzymes [BR:
pcaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DSC91_006936
Messenger RNA biogenesis [BR:
pcaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSC91_006936
Transfer RNA biogenesis [BR:
pcaf03016
]
Prokaryotic type
tRNA degradation factors
DSC91_006936
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
HTH_12
CSD
Motif
Other DBs
NCBI-ProteinID:
AXL53486
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All DBs
Position
2:3822327..3824843
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AA seq
838 aa
AA seq
DB search
MQREKIIDKPLSKFPYPIPSREEILGVLRTSEAPLAANDIAEALSIKRQEREGFFKRLGA
MERDGQIRLDQRNLYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPTGEMQKVMHN
DRVLARIVGYDRRGRPEGHIVEVTDRANKRVIGRLLNENGALIVAPEDKRIGHDILIAQN
TKKAKVGQVVVVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQAAL
DEAARLPDEVRPVDARHRIDLRDVPLVTIDGEDARDFDDAVYCEPVQVGRGEGFRLIVAI
ADVSHYVHPKSGLDADAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPNVDRCVLVCDMIV
TARGEVKAYQFYPGVMHSAARLTYTEVAAVLKNTKGPEAARRAALLPQLQNLYGVYKSLF
AARQKRGAIDFDTTETYIVCNAQGKIEQIIPRTRNDAHKLIEECMLAANVCAADFLKRNK
HPGLFRVHAGPTAEKLENLRTFLRGMGLTLAGGDKPHASDYAALMAQIRERPDAQMLQTM
LLRSMQQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGRKYQPEPPQG
VELNTALSPRARAMQQADEEKHGARNRSKDVAIWEELGLHCSSNERRADEASRDVEAWLK
CYFMRDKLGEEYGGMVNGVTSFGIFVQLDSLFIEGLVHVTELGSDYFQYDEIKNELRGER
TGIRYRLSDRVRVQVSRVDLDARKIDFRLVRDTPIKPPASRPALADKAAGESGGARVRAL
PPVDGGAGGAAAPGGRRKKAAPAQTAAVKEARAARGAAKKHGGASAKPASKPQARKKR
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgagaaaaaatcatcgacaagcccttgagcaaattcccgtatccgatcccgagc
cgcgaagaaatcctgggcgtcctgcgcacgagtgaagcgccgcttgccgcgaacgacatc
gccgaagccctgtcgatcaagcgccaggagcgcgaaggatttttcaagcgcttaggcgcc
atggagcgcgacggccagatccggctcgatcagcgcaatctctatcagctgacccatccg
tcgaacttcgtcgcgggccgcgtgcagggccatcgcgacggctacggtttcctcattcgc
gacgacggtcaggacgatctgttcctgcccaccggcgaaatgcagaaggtcatgcacaac
gatcgtgtgctcgcgcgcatcgtcggctatgaccgtcgtggcaggcccgagggccatatc
gtcgaagtcacggaccgcgccaacaagcgcgtgatcggccgcctgctcaacgagaacggc
gcgctgatcgtcgcgcctgaagataagcgcatcggccatgacatcctgatcgcgcagaac
accaagaaggccaaggtcggccaggtggtggtggtcgagctcaccgatttcccgagccgt
cactcgcagccgctcggccgggtggtggaagtgctcggcgacatcgacgaccccggcatg
gaaatcgaaatcgcggtgcgcaagtacggcgtgccgcacgaattcagccaggccgcgctc
gacgaagccgccaggctgcccgacgaagtgcgcccggtcgacgcgcgccatcgtatcgac
ctgcgcgacgtgccgctcgtcacgatcgacggcgaagacgcccgcgacttcgacgacgcc
gtctattgcgagccggttcaggtcggtcgcggcgaaggcttccgcctgatcgtcgcgatc
gcggacgtgtcgcactacgtgcatccaaagagcggtctcgacgccgacgcgatcgaacgc
agcacctcggtgtacttcccgcgccgcgtgatcccaatgctgccggagaagctgtcgaac
ggcctatgttcgctgaatccgaatgtcgaccgttgcgtgctggtgtgcgacatgatcgtc
acggcgcgcggcgaggtgaaggcgtatcagttctatccgggcgtgatgcactcggcggcg
cggctgacctatacggaagtggccgcggtgctgaaaaacaccaaaggtccggaagccgcg
cgccgcgccgccttgctgccgcagctgcagaatctttacggcgtctacaagtcgctgttc
gccgctcgccagaagcgcggcgcgatcgacttcgatacgaccgagacgtacatcgtctgc
aatgcgcagggcaagatcgaacagatcattcctcgcacgcgcaacgacgcgcacaagctg
atcgaggaatgcatgctggccgcgaacgtctgcgcggccgacttcctcaagcgcaacaag
cacccgggtctgttccgcgtgcacgcggggccgaccgcggagaagctcgagaatctgcgc
accttcctgcgcggcatgggcctcacgcttgccggcggcgacaagccgcacgccagtgat
tacgccgcgctgatggcgcagatccgcgagcggccggacgcgcagatgttgcagaccatg
ctgctgcgctcgatgcaacaggctgtctacagtccggacaacattggccacttcggtcta
gcgtacgaggcgtatgcgcactttacgagcccgattcgccgctatcccgacctgctcacg
caccgcgcgatctacgcgatcctgcaaggccgcaagtatcagccggagccgccgcaaggc
gtcgagttgaatacggcgctgtcgccgcgcgcccgcgcgatgcagcaggcggacgaggaa
aaacacggcgcccgcaaccgctcgaaagacgtggcgatctgggaagaactcggtttgcat
tgctcgtcgaacgagcgccgtgcagacgaagcctcgcgcgacgtggaagcctggctcaag
tgctacttcatgcgtgacaagctgggtgaagagtacggcggcatggtgaacggcgtgacg
tcgttcggcattttcgtgcaactcgattcgctcttcatcgagggcctcgtgcatgtcacc
gaactgggctcggactacttccagtacgacgagatcaagaacgagttgcgcggcgagcgc
accggcattcgttatcgtctgtcggatcgtgtgcgggtgcaggtgagccgcgtcgatctc
gacgcgcgcaagatcgacttccgcctcgtgcgcgatacgccgatcaagccgccggcgagc
cgtccggctctcgccgacaaggccgccggcgaaagcggcggtgcgcgtgtgcgcgcattg
ccgccggttgatggcggcgcaggtggcgcggcggcgccgggcggacggcgcaagaaggcc
gcgccggcgcaaaccgcggccgtcaaggaagcgcgggcggcacgcggcgcggcgaagaag
cacggcggcgcgtcggccaagccggcctcgaaaccgcaggcccgcaagaagcgctga
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