Porphyromonas cangingivalis: NCTC12856_01862
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Entry
NCTC12856_01862 CDS
T06514
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcag
Porphyromonas cangingivalis
Pathway
pcag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12856_01862 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcag03019
]
NCTC12856_01862 (deaD)
03009 Ribosome biogenesis [BR:
pcag03009
]
NCTC12856_01862 (deaD)
Enzymes [BR:
pcag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12856_01862 (deaD)
Messenger RNA biogenesis [BR:
pcag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12856_01862 (deaD)
Ribosome biogenesis [BR:
pcag03009
]
Prokaryotic type
rRNA helicases
NCTC12856_01862 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ARMC9_ARM
Motif
Other DBs
NCBI-ProteinID:
VEJ04578
LinkDB
All DBs
Position
1:complement(2110173..2111966)
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AA seq
597 aa
AA seq
DB search
MVAPFFSYTTKDFTHLKTFEALGISAPLCEAIKEMGFESPMPVQEAVIPHLLGGGIDIIA
LAQTGTGKTAAFGLPILQNIDTSKRYPQALILSPTRELCVQIAKDLANYSKYLDDLNVVA
VYGGASIELQMKQISKGVQIVVATPGRLLDLVRRGALDLSKISDVVLDEADEMLNMGFSE
SIDEILKEIPQERHMLLFSATMPEEIARITRQYMHDPKEIVVGERNVTNKNIRHLYYMVS
AKDRYLALKRIADYYPSIYGIIFCRTRRDTQEIADKLIQDGYNADALHGDLSQQQRDYVM
QKFRVRNLQLLVATDVAARGLDVDNLTHVIQFGLPDDPESYTHRSGRTARAGKSGISISI
CHSREKGRLRDIAKLTGVEFERAHIPSGKEICEKQLYNFIDGLENTIPDDERIAPYINGV
MNRLSWLDNEQLIRRVVYMELERLIKYYEDAEEIQEVSEKKERAVEREHKTREERRRGVA
QKGFERLTINFGKRDKVYPNTLIDIINRCLGSFVEIGKIDIYESRAYFEVKKEDAFTVID
EMNSYDLGGRRIKVEIAKPEADRKESRGEYNRGKRDGKRKENRQFTSGFRREGKRKR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggttgcaccctttttttcgtacacaactaaagatttcacacatttgaaaacatttgaa
gcattgggcatctctgcccctttatgcgaagctatcaaagagatgggcttcgagtctccc
atgcccgtgcaggaggctgtcatacctcatctgctcggtggaggtatagatatcatcgca
cttgcacagaccggtacaggtaagactgcggctttcgggcttcccatcctacaaaatata
gacacctccaagcgttatccacaagcgctcatcctatctcccacccgtgagctctgcgtg
cagatcgccaaagatctcgcgaactacagcaagtacctcgatgacctcaatgtcgtcgct
gtctatggtggtgcatccatagaactgcagatgaagcagatctccaagggggtacagatt
gtcgttgcgacccccggacgtctccttgaccttgtccgtcgtggagctctcgatctctcg
aagatatcggatgttgtccttgacgaggcagacgagatgctcaacatgggtttctccgag
agcatcgatgagatcctcaaagagatcccccaagagcgacacatgctcctcttcagtgcc
accatgcccgaagagatcgctcgcatcacccgtcaatacatgcacgaccccaaagagatt
gtggtgggcgaacgcaatgtcacaaacaagaacatccgccacctctactatatggtctcg
gccaaggacagataccttgccctcaagcgcatagcagactactacccaagcatatacggt
atcatcttctgccgtaccagacgagacacgcaggagatagcggacaagctcatacaagat
ggctacaatgcggatgcgttgcatggtgacttgtctcagcagcaacgtgactacgtgatg
cagaagttccgcgtgcgcaatctccagctcctcgtcgccacagacgtcgctgctcgcggt
ctggacgtggacaacctcacgcacgtgatccagttcgggcttcccgatgacccggagtct
tatacccaccgcagtggccgtacggctcgtgccggcaagagcggtatctcgatctctatc
tgccactctcgcgagaagggtcgtcttcgcgacattgcgaagctgacaggcgtcgagttt
gagagggctcatataccatcaggcaaagagatatgcgagaagcagttgtacaacttcatc
gatggactcgaaaacaccatcccggacgatgagcgtatcgctccgtacatcaatggggtg
atgaatcgcctctcttggttggacaacgagcaactcatccgtcgtgtcgtctacatggag
ctcgaacgcctcatcaagtactacgaggatgcggaagagatccaagaggtcagcgagaag
aaagaacgagctgtcgaacgtgaacacaagacacgagaagagcgtcgtcgtggagtggca
cagaaaggcttcgagcgactgaccatcaacttcggcaaacgtgacaaggtctaccccaac
accctcatcgacatcatcaaccgctgtcttggcagttttgtcgagatcggtaagatcgac
atctatgagtctcgtgcttactttgaggtgaagaaagaagatgccttcaccgtcatcgat
gagatgaacagctatgatctcggcggtcgtcgcatcaaggtcgagatcgcgaagcccgaa
gccgatcgcaaagagagccgtggcgaatacaatcgtggcaagcgagatggcaaacggaaa
gaaaatcgccagttcacctccggtttccgccgtgaaggcaagcgcaaacgataa
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