Pseudomonas campi: HNE05_05595
Help
Entry
HNE05_05595 CDS
T07561
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcam
Pseudomonas campi
Pathway
pcam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HNE05_05595 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcam03400
]
HNE05_05595 (mfd)
Enzymes [BR:
pcam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNE05_05595 (mfd)
DNA repair and recombination proteins [BR:
pcam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HNE05_05595 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKE62851
UniProt:
A0A6M8F6K0
LinkDB
All DBs
Position
complement(1725669..1729103)
Genome browser
AA seq
1144 aa
AA seq
DB search
MSVLRLPKLPAATGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLQEELAF
FAPELPVLHFPDWETLPYDVFSPHQDIISQRIAALYRLPQLKHGVLVVPISTALHRLAPT
RFLLGSGLVLDVGQKLDVEEMRARLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDTPF
RIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLDKKSVTDFRGRFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFFEDNATLFDYLPADTQVFSLPGIEKAAEQFWNDARN
RYEERKVDPERPLLPPADLFLPVDDCFGRLKNWPRVVADQADIETGVGRERFDARALPDL
AIQAKASEPLAALRRFIEEYPGRVLFCAESAGRREVLLELLARLKLKPVEVAGWPEFAES
KSRLGICIAPLDEGLLLDNIALIAESPLFGQRVMQRRRREKSRDGGDNVIKNLTELREGS
PVVHIDHGVGRYLGLITLEIEGQAAEFLALMYAEEAKLYVPVASLHLIARYTGSDDALAP
LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPTVDYATFSAGFPFEE
TPDQQTAIEAVREDMLAAKSMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVGEAVQQLAEGKVDIVIGTHKLLQEDVKFS
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMEQNNPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIG
HGQMRERELEQVMGDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKQMTDDAQKRLEAISGAQDLGAGFLLATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVH
ARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRITLLKLQAEKLGIKKIDAG
PQGGRIEFAATTCVDPLTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTLEALLER
LESV
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcctgcgcctaccgaaactacccgccgccactggcaagcaacactggggcaac
ctgcccggtgctgcgctgtcgctggcgattgccgaagccgccagcgccgccaagcgcttc
accctgctgctgactgccgacagccagagcgccgagcgcctgcaggaagagctggcgttt
ttcgccccggaactaccggtactgcactttcccgactgggaaaccctgccttacgacgtg
ttttcgccgcaccaggacatcatttcccagcgcatcgccgcgctctaccgcctgccgcag
ctcaagcacggcgtgctggtggtgccgataagtaccgccctgcaccgcctggcgccgacg
cgcttcctgctcggctcgggcctggtgctggatgtcggccagaagctggatgtcgaggaa
atgcgcgcacgcctggaagccgccggctaccgctgcgtggataccgtctatgaacatggc
gaattcgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcgacacgccattt
cgcatcgacctgttcgacgacgagatcgagaccctgcgcaccttcgacccggaaacccag
cgttcggtggacaaggtcgagtcgatccgactgctgccggcgcgcgagttcccgctggac
aagaaatccgtcaccgacttccgcggccgcttccgcgagcgtttcgacgtggatttccgc
cgttgcccgatctatcaggacctctccaccggcatcaccccagccggcatcgagtactac
ctgccgctgttcttcgaggacaacgccaccctgttcgactacctgccggccgacacccag
gtgttttccctgccgggcatcgagaaggccgccgagcagttctggaacgacgcacgcaac
cgctatgaagagcgcaaggtcgaccccgagcgcccgctgctgccgccggccgatctgttc
ctgccggtggacgactgcttcggccgcctgaagaactggccacgggtggtcgccgaccag
gccgatatcgaaaccggcgtcggccgcgagcgcttcgacgcgcgcgccctgcccgacctg
gcgatccaggccaaggccagcgagccgctggcggcgctacggcgttttatcgaggaatac
ccgggccgcgtgctgttctgcgccgaatcggcgggccgccgcgaagtgctgctggaactg
ctcgcccgcctcaagctgaaacccgtggaagtcgctggctggccggagttcgccgagagc
aagtcgcgcctgggcatctgcatcgccccgctggatgaaggcctgctgctcgacaatatc
gccctgatcgccgagagcccgctgttcggccagcgcgtgatgcagcgccgccgccgcgag
aagtcgcgcgatggcggcgacaacgtgatcaagaacctcaccgagctgcgcgaaggctcg
ccggtggtgcacatcgaccatggcgttggccgctatctggggctgatcactctggaaatc
gaaggccaggccgccgaattcctcgccctgatgtacgccgaagaagccaagctctatgtg
ccggtggccagcctgcacctgatcgcccgctacaccggcagcgacgacgccctggcgccg
ctgcaccgcttaggctcggaaacctggcagaaggccaagcgcaaggccgccgaacaggtg
cgcgatgtcgccgccgagctgctcgacatctacgcccgccgcgccgcccgcgaaggctat
gcctttgccgaccctactgtggattacgccaccttcagcgccggcttccccttcgaggaa
accccggatcagcagaccgccatcgaggcggtgcgcgaggacatgcttgccgccaaatcc
atggaccgcctggtctgcggcgatgtcggcttcggcaagaccgaagtggcgatgcgcgcg
gcctttatcgccgtgcatggcggcaagcaggtggcggtgctggtgcccactaccttgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtcaaggtcgag
gtgatgagccgcttcaagagcgccaaggaagtcggcgaggccgtccagcaactggccgaa
ggcaaggtggatatcgttatcggcacccacaagctgctgcaggaagacgtcaagttcagc
aacctgggcctggtgatcatcgacgaagagcatcgtttcggcgtgcgccagaaggaacag
ctcaaggccctgcgcagcgaggtggatatcctcaccctcaccgccacgcctattccgcgc
accctgaatatggcggtggccggcatgcgcgacctgtcgatcatcgccaccccgccggcg
cggcgcctgtcggtgcgcaccttcgtcatggaacagaacaacccgaccatcaaggaagcg
ctgctgcgcgagctgctgcgcggtggccaggtgtactacctgcacaacgatgtgaagacc
atcgagaaatgcgccgccgacctcgcagaactggtgcccgaggcgcgcatcggcatcggc
catgggcagatgcgcgagcgcgagctggaacaggtgatgggcgacttctaccacaagcgt
ttcaacgtgctgatcgcctcgaccattatcgagaccggcatcgacgtgcccagcgccaac
accatcatcatcgagcgcgccgacaagttcggcctggcccagctgcaccaactgcgcggc
cgcgtcggccgtagccaccaccaggcctacgcttacctgttgacgccaccacgcaagcag
atgactgatgatgcgcagaagcgcctggaagccatctccggtgcccaggacctcggcgcc
ggtttcctcctggccacccatgacctggaaatccgcggcgccggcgaactgctcggcgac
ggccagagcgggcagatccaggcggtcggtttcaccctctatatggaaatgctcgagcgc
gcggtaaaggccatccgcaagggcgagcagcccaacctcgaccagccgctgggtggcggc
ccggagatcaacctgcgagtgccggcgctgatccccgaggactatctgccggatgtgcac
gcgcggctgattctctacaagcgcatcgccaacgccgccgacgaggatggcctgaaagag
ctgcaagtggagatgatcgaccgcttcggcctgctgccggagccgaccaaaaatctggta
cgcatcaccctgctcaagctgcaggcggaaaagctcgggatcaagaagatcgacgccggc
ccgcaaggcggacgcatcgagttcgccgccaccacctgcgtcgatccgctgacgctgatc
aagctgatccagagccaacccaagcgctacaagttcgaaggcgccaccatgttcaagttc
caggtgccgatggagcgcccggaagaacgattcaataccctcgaggccctgctcgagcgc
ttggaatctgtttag
DBGET
integrated database retrieval system
