Phalacrocorax carbo (great cormorant): 104042481
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Entry
104042481 CDS
T08596
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03013
Nucleocytoplasmic transport
pcao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104042481 (UPF3A)
03015 mRNA surveillance pathway
104042481 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104042481 (UPF3A)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104042481 (UPF3A)
mRNA cycle factors
P-body specific factors
104042481 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
104042481
NCBI-ProteinID:
XP_009500230
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MQVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDILLF
RDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYCAD
EEKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKK
RLREEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELASEKHKEKGEEADT
EENKWDKSPGSGSIKSKSLEASLKELKEKSQNDSDKEQRDLERRFRDKEPERQRYRLDDG
RKHRAHYEFDKFVRRNEEELKWGKGYNQDRGKKGNYNYSFTVEAVDKLGKEDKCDDMASK
KERIRNKDRPAMQLYQPGARTRTHTGSTSKTYDCSGKSFEDALDKKYEADNSAGGGSEKS
EEAE
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtagttattcgacggcttcctccttgtcttactaaggagcaactggaggaacag
ctacatcctctacctgcccatgattattttgagttttgcactgctgatcccagcctttat
cctcatctctactcaagagcatacattaactttagaaatcctgaggacatccttcttttt
agagatcgctttgatggctatgtcttcattgataataaaggtttggagtatcctgcagtg
gttgaatttgctccattccagaagatttcaaaaaagaagctgaagaagaaagatgccaaa
gctgggagcattgaagatgatccagaatataggaaatttttagagagttattgtgctgat
gaagagaaaatctgtgccaatcctgagattcttttgggagagattgaggccaaaacaagg
gaactcattgctagaagaacaacaccccttttggaatatattaaaaatagaaaattagaa
aagcagagaatacgagaggagaaaagagaagaacggaggcggagagaattggagaagaaa
cgtctgcgggaggaagagaaaaggaagcgcagagaagaagaaagacgtaaaagaaaagaa
gtggagaagcaaaagaagatttctgaaaaagaaataaggatcaagcttctcaagaagcct
gaaaaaggagatgaactggccagtgaaaagcacaaagaaaaaggtgaagaagctgacact
gaagaaaacaaatgggataaatcacctggatctgggagtataaaatccaaatcattggag
gcttcactgaaagaacttaaggaaaagtcacaaaatgatagtgacaaagagcaaagagat
ttggagagaagatttcgagacaaagaacccgaaagacaaaggtatcgattggatgatggc
agaaagcatagagctcactatgagtttgacaagtttgtgagaaggaatgaagaagagctg
aagtgggggaaaggatacaaccaagacagaggaaagaaagggaactacaactacagcttc
actgtggaggcagtagacaaactgggtaaagaggacaagtgtgatgacatggcatccaaa
aaggagcgcataagaaataaggatcgcccagccatgcagttataccagccaggagctcgc
actcgaacacatacgggatctacaagtaaaacctatgactgcagtgggaaatccttcgaa
gatgctcttgataagaagtatgaggcagataattcagctggaggtggttctgagaagagc
gaagaagcagaataa
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