Phalacrocorax carbo (great cormorant): 104045483
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Entry
104045483 CDS
T08596
Symbol
CHD6
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcao03036
]
104045483 (CHD6)
Chromosome and associated proteins [BR:
pcao03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
104045483 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Chromo
Helicase_C
BRK
ResIII
DEAD
CHDCT2
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
104045483
NCBI-ProteinID:
XP_009503753
LinkDB
All DBs
Position
Unknown
AA seq
2699 aa
AA seq
DB search
LSRSPMSDAWECKAQDPFASSEEQDEVPHQVTVTDTGRQCQCPEEEPDGAPQKRTSTQNG
MQDSGGGGTGVKKKRKKKDLGEHEGGEKAAVEVKPKRRREPKEPKDPKKAKEPKKPKEPK
QREVGKKPRKPREPKAPKEPKDKKSGSEPAPRARPKKSSKDTPVEKKKKGKRKNEISVDS
LDLDQDLLSPSVQSPEESAESADSQKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAG
RTSALSASTLAWQAEEPPEDDANIIEKILASRMVQKEAHPGGLAFEMEEFYVKYRNFSYL
HCKWATLEELEKDPRISQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKD
PDTGEEVTHYLVKWCSLPYEESTWELEEDVDPGKIKEFEALQIPPEIKHMERPASESWQK
LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLMGI
HGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLPGIF
KFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGT
PLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVE
KNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGANQHNMPNLINTMMELRKCCNHP
YLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQM
VRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINL
TAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLD
KAVLQDINRKGSTNGVGWLQRFEVISLLXQQEGAYGALMDEEDEGSKFCEEDIDQILQRR
TQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTDAKNEKESLVID
RPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRFNEKTRRYLRAECFRVEKNLLI
FGWGRWKDILTHGRFKWHLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWDLITPTKDGQ
NQALQNHSVHRSTRDALRHCPAWPTVSMVLTGWHLLVVLHDDSYKKHLKQHCNKVLLRVR
MLYYLKAEVLGEAADKAFEGTPARELDVLLPDIDYVEIPVDWWNAEADKSLLIGVFKHGY
ERYNAMRADPALCFLEKVGMPDEKLLSAEQGVSDGAQDTAERGSMDKEESGGEKLEGLPK
QEDIVAAGGGEASEGRSQRQDGSDSDRSCWPVSSALTARLRRLLTVYQRRHPXXXXXRKE
LPPRAEMLVPGNHGYWLQDEMFRRASEMDSVNKEMQKRWTRREQADFYRTVSSFGVIYDQ
EKKIFDWAQFRAISRLEKKTDESLEKYFYSFVAMCKNVCGLPLWKEDGPPDPDIYVEPIT
EERAARTLYRIELLRKVREQVLKCPQLHERLQLCRPIXVWWECGKHDRDLLIGTAKHGLN
RTDYYIMNDPQLSFLDAYRNYAQHKRTGLPGPETLCCLYQTNSKLYSSPLYSQVDRTCEP
LENEAESQIKLDTVDNTVSQAGGSPPDANCETFMSNVQDIISSNYDESSLPDSLVCMMYD
EKACNSEQSSLARDSPSCTDVGSSVAKLSEGKLEGDEDPSSCDADAMRETPFLEGLQVGC
DRMDSQNEEAEPSPSTPESDPSQSIPAELCEALQQKGDLTSSAPVLPEHGAMEGVISMGL
YSPSLHNYEIKVPPEKRFISLLQEKGMEAKSAPSQSHSEEDDEEEEDDDNFEAAADVVED
LSGPRTRSSCDPEANELGGEEQSSGLPTPEDTCPEDVNGERESLGLGTPEGLGEPRPEGT
LQHSPGQAQSQAFSLPAPLLGATGAEAPGARKEAWGQVAEGQACCREALHPETQEVKQED
CEKRDEGEKASSSQSQDGPEKYLEEESKSCASVLPGEIDDLQDARAPTIAQLLQEKTLYS
FSEWPKDRVIINRIDNICHAILKGKWPSSSQXXETQSRLTAPAVASNASIRNSFAESEAP
DPGFNNGVLISQVQKEGFLTPAFAKDERKHRRPYEFEMERDAKQRSLEQLAATHAHPPIV
LNGWRDAAVDLSRTSDVSPGNSSPFPLNTNMPKLGTVNTLQGSLGMDLSGILQAGLIHPV
TGQIVNGSLRRDDAAMRRRRGRRKNVEGMDLIFLKERPLPTRLQDVQEDQPQPPQNSPLP
DGPVAATSTPQPVPAAGSQAEKAVPNKSLLDWLRQQSDYTLDVPSFGTNFSDKPKQRRQR
CKDPSKLDINSLTGEERVPVVHKGTGRRLGGATAPALKELPRWLDANLEYAVAADWADIV
KLSGYLPESKFNRILTEPVLRDAGPRRRGRRPRSELIKGSGVIADSSSGMGPLFMNGLIA
GMDLVGLQNMRNMQGIPLTGLVGFPAGFAAVPAGEDVKSTLSMLPMMLPGMATVPQMFGV
GGLLNPPMTTTCTASAPTSLTSTTKSGTANVEKATEDKQSSQEVKKETLSEDKPGPSSFS
NQTESAITTSSAVAFNPFLIPGMSPGLIYPSMFLSPGIGMALPSIQQTRHSEAANLESQK
RKRKKVKGELANPEPETVSLPEKEAANSQNCTEQTRPLSAEKEQDGPAEEEREAARDTN
NT seq
8102 nt
NT seq
+upstream
nt +downstream
nt
cgctgagccgctccccaatgtcggatgcgtgggagtgcaaagcacaggacccctttgcca
gcagcgaggagcaggacgaggtgccccaccaggtgacggtgacagacacaggcagacagt
gccagtgcccagaggaggagcccgacggggctccccagaagcggacaagcacccagaacg
ggatgcaggacagtgggggcggcggcacgggggtgaagaagaaacggaagaaaaaggatc
tgggagagcacgaagggggagaaaaagcagctgtggaggtaaaaccaaagaggaggagag
agcctaaagaaccaaaagatcctaagaaggctaaggagcccaagaagccgaaggagccca
agcagagggaggtgggcaagaagccccggaaacctcgggaacccaaagcccccaaggagc
ctaaagacaagaagagtggctctgagcctgcccccagagcaagacccaagaagagcagca
aggacacccctgtggagaagaagaagaaagggaagaggaaaaatgagatatcagtggaca
gtttggatttggatcaggatctcctgagcccttcagtgcagagccctgaggagtctgcgg
agtcagccgacagccagaaacgccgctcaggacggcaagtgaagaggaggaagtacaatg
aggacctggatttcaaggtggtggatgacgacggcgagacaatagctgtcctaggagctg
ggcgaacctctgcactttctgcctctactctggcatggcaggcagaggagcctcccgagg
atgatgccaatatcattgagaagatccttgcctccaggatggtgcagaaggaggctcatc
ctggaggcctggcgtttgagatggaggagttctatgtcaagtacaggaacttctcgtacc
tccactgtaagtgggccactctggaggagctagagaaggaccccaggatctcacagaaga
taaagcgcttccggaacaagcaggctcagatgaagcatatttttacagagcctgatgagg
atctgttcaacccagactatgtggaggtagatcgaattctggaggtggctcacacaaagg
accctgacaccggggaggaggtgactcactacctggtgaagtggtgctcgctgccctacg
aggagagcacttgggagctggaggaggatgtcgacccaggaaagatcaaagagtttgaag
ccctccaaatccctccagaaatcaagcacatggagcgcccggcatctgagtcctggcaga
aactggaaaaatcccgggagtataagaacagcaaccagctgcgggagtatcagctggagg
gaatgaactggctgctcttcaactggtataacaggaagaattgcatcctggctgacgaga
tggggctggggaagacaatccagtcgatcaccttcctctcagaaatatttctgatgggca
tccatggccccttcctcatcatcgcacctctctccaccatcaccaactgggagagggagt
tccgcacctggacagagatgaatgccatcgtgtaccatggcagccagatcagccggcaga
tgatccagcaatacgagatggtgtacagggatgcacagggtaaccctctccctgggatct
tcaagttccaggtggtcatcaccacctttgagatgatccttgccgactgtccggagctga
agaagatccagtggcgctgcgtagtcattgatgaggcacatcgcctgaagaacaggaact
gcaaactcctggaggggctgaagctcatggccctggagcacaaggtgctgctgacaggga
cccccctgcagaactcagtggaggagctcttcagcctcctgaatttcctggagccacagc
agttcccctcagagacagccttcctggaggagtttggagacctgaagacagaggagcagg
tgaagaagctgcagtccatcctgaagcccatgatgctgcgacggctgaaggatgatgtgg
agaaaaatctggcacccaagcaggagaccatcattgaggtggagctgaccaatatccaga
agaaatactaccgggccatcctagagaagaacttctccttcctctccaagggtgccaacc
agcacaatatgcccaacctcatcaatactatgatggagctgcggaagtgctgcaatcacc
cgtatctcatcaatggggcagaggagaagatcctggaagacttccgtaaaacacacagcc
cggaagcgccagacttccagctgcaggcgatgatccaggcagctgggaagctggtgctca
ttgataagctgcttcccaagctgatcgccggtgggcataaggtgctcatcttctcccaga
tggtgcgctgccttgacatcctggaagactatctcattcagaggcggtacacctatgagc
gcattgatgggcgggtgcgtgggaacctgcgccaagccgccatcgaccgcttctgcaagc
ctgactcagatcgcttcgtctttctcctgtgcacgcgggcaggtgggctgggcatcaacc
tgaccgctgccgacacctgcatcatctttgattcggactggaacccacagaacgatctcc
aggctcaagctcgctgccaccggattgggcagagcaaggcagtgaaagtctatcgcctca
tcaccaggaactcttacgagcgggagatgttcgacaaggccagcctgaagctgggcctcg
ataaggctgtgctgcaggacatcaaccgcaagggcagcaccaacggggtaggttggctgc
agcgttttgaagtaatctctctgctgtagcagcaggaaggtgcctatggtgctctcatgg
atgaggaggatgaaggatcaaagttctgcgaggaagacattgatcagatcctccagcgca
ggacacagaccatcacaattcagtctgaagggaagggctccacctttgccaaggccagct
tcgtagcgtcaggaaacagaacagacatttccttagatgaccccaacttctggcaaaagt
gggccaagatagcagagctcgatacagatgccaagaatgaaaaggagagcctggttattg
acaggccccgagtgcggaagcaaaccaaacactacaactcctttgaagaggatgagctga
tggagttctctgagctggacagtgactcggatgagcgacccacacgctcgcggcgcttca
atgagaagacgcggcggtacctgcgggctgagtgcttccgtgtggagaagaacctgctca
tattcggctggggacgctggaaagatatcctgacccacgggcggttcaagtggcacctga
atgagaaggacatggagatgatttgtcgggccttactggtctattgtgtcaaacactaca
agggggatgagaagataaagagttttatctgggatctcatcacaccgacgaaggatggcc
agaaccaggctctgcagaatcactcagtgcaccgcagcaccagagatgccttgcggcact
gtccagcctggcccacagtgtccatggtgctcactggctggcacttgctggttgtcctgc
atgacgacagctacaagaagcacctcaaacagcactgcaacaaggttctgctgcgggtgc
gaatgctctactacctgaaggctgaagtgctgggggaggccgcggacaaagcctttgagg
ggacacccgccagggagctggacgtgctactgccagacattgactacgtggagatcccag
tggactggtggaatgctgaagccgataaatccctgctcatcggtgtcttcaagcatggtt
atgagaggtacaacgccatgcgggcggacccggcgttgtgctttctggagaaggtgggca
tgccagatgagaagctgctctctgcagagcaaggtgtcagcgacggggcccaggacactg
ctgaaaggggcagcatggacaaggaagagagtggtggagaaaagctggaggggctgccaa
agcaggaggacatcgtggctgctggggggggtgaagccagtgaggggaggagccagcggc
aggatggctccgactcagacagatcctgctggcctgtctcatctgccctcacagccagac
tgcggaggctgctcactgtctaccagcggcgccacccgannnnnnnnnnnnaccgcaaag
agctccctccccgcgccgagatgctggtgcccggtaaccatggatactggctgcaggacg
agatgttcaggagagcctccgagatggactcagtgaacaaagaaatgcagaaaaggtgga
ccaggagggagcaggcagatttctaccgcactgtctcctcctttggggttatctatgacc
aggagaaaaagatctttgactgggcccagttccgagccatctctcgactggagaagaaga
cagatgagagcctggagaagtacttctacagcttcgtggccatgtgcaagaatgtgtgtg
gtctcccactgtggaaagaggatggtcccccagaccctgacatctacgtggagcccatca
cagaggaacgcgctgccagaaccctctaccgtatcgagcttctgcgaaaggtgcgcgagc
aggtgctcaagtgtccgcagctccacgagcggctccagctctgccggcccattnttgtgt
ggtgggagtgtggcaaacatgatcgggacctgctgatcggcaccgccaagcatggcctga
atcgcactgactactacatcatgaatgacccccagctgtcttttttagatgcatacagga
actatgcccagcataaaagaacggggctcccaggcccagaaactctgtgctgcctttacc
agactaactccaaactctacagttcccctctgtacagccaggtggaccggacttgtgaac
ccctggagaatgaagccgagagtcagatcaagctagacaccgtagacaacactgtgtccc
aggctgggggcagtccgccagacgcaaactgtgaaacattcatgtctaacgtccaggaca
taatttccagtaactatgatgagagctctctgccggactcgttggtatgcatgatgtacg
atgagaaggcctgtaacagcgagcaaagctcccttgcccgagacagcccaagttgcacag
atgttggaagcagcgttgctaaactgtctgagggcaagctagagggggacgaggatccgt
ccagctgcgatgcagatgccatgagagagactccgttcctagagggtttgcaggtgggct
gtgaccgaatggatagtcagaacgaggaagctgaaccttcaccttctacccctgaaagtg
acccttcacagagcatcccagcagaactctgtgaagccttgcagcagaagggagacctca
ccagctctgcaccagtgctgcctgagcacggtgccatggaaggggtcataagcatggggc
tctacagtcccagtcttcataactatgaaataaaggttcctcctgagaagaggttcatca
gtctgctgcaggagaaaggaatggaggcaaagtcagcgccaagtcagagccacagtgagg
aagatgatgaggaagaagaggatgatgataactttgaggcagcagcagatgttgtagaag
acctgagtggccccaggaccagaagcagttgtgaccctgaggctaatgaactggggggcg
aggagcagagctctggtctccccacacctgaggacacttgcccagaagatgtgaatggcg
agagagagtccctggggctggggacacccgaagggctgggggagcccaggccagagggca
ccctgcagcactcaccaggccaggctcagagccaggctttcagcctgcctgcgcctctgc
tgggggccacaggggcagaagcccccggtgcccgtaaggaggcctggggccaagtggcag
aggggcaggcatgctgcagagaggccctgcaccctgagacccaggaggtgaagcaagaag
actgtgagaagagagatgagggggagaaagccagcagcagccagagtcaagatggtcctg
agaagtacttggaggaagagagcaagagttgtgcttctgtcctgcctggggagattgatg
accttcaggatgcccgggcaccgaccatagcccagctgctgcaggagaagacactttact
ccttctctgagtggcctaaggaccgtgtgatcatcaaccgcattgacaacatctgccatg
ccatcctgaaaggcaagtggccttcctccagccagnnnnnngagacacaaagccggctga
cggctccagcagtagccagcaatgccagcatcaggaacagctttgccgagtcagaagccc
ccgatcccggcttcaataatggggtgttaatctcacaggtacaaaaggaaggtttcctga
cccctgcctttgcaaaggatgagcggaagcacaggaggccctatgaattcgagatggaga
gagatgctaaacagaggagcttggagcagctagcagcaacccatgctcatccacccattg
tgctgaacggctggcgcgatgcagcggtggacttgtccagaacctctgatgtgtccccgg
ggaactcctctcctttccccctgaacacaaacatgcccaaactggggactgtgaacaccc
tccagggctccctgggcatggacttgtctggaatcctccaggcagggttaatccatcctg
tcacaggacaaattgtaaacggcagcctccgaagagacgatgctgccatgaggcggagac
ggggcaggagaaaaaatgtagaagggatggacctcattttcttgaaggagaggcctcttc
caaccaggctgcaggatgttcaggaagaccagccgcagcccccccagaacagtcccctcc
ccgacggcccggttgctgctacctcaactccacagccagtcccagctgcaggcagccaag
cagagaaggctgtcccgaataagagtctcctcgactggctccgtcagcagtctgactaca
cactcgacgttcccagctttggcacaaatttttcagacaagcccaagcagaggaggcaac
gctgcaaggaccccagcaaattggacattaactcactcacgggagaggagcgggtgcctg
tggtacataagggtaccggacggcggttagggggagccacggcaccagcattgaaggaat
tgccaaggtggcttgatgcaaacttggagtatgctgttgcagctgactgggctgacattg
ttaagctttcaggctacttaccggaaagcaaattcaatcgcatcctaaccgagcctgtgc
tccgagacgcggggccccgacggagggggaggaggccccgaagcgaactcattaaaggct
ctggcgtcatagcagactcttcttctggaatgggaccattgttcatgaacggactgattg
ctgggatggatctagtaggacttcagaatatgagaaacatgcaagggatccctctgactg
ggctggttgggtttcctgctggatttgcagcagtgcctgccggcgaggatgtgaaaagca
ccctgagtatgctgcccatgatgctgccgggcatggctaccgtaccacagatgtttggcg
ttggaggacttctcaacccccccatgacaactacttgtactgcaagtgctccgacttcgt
taacaagcacaacaaaaagtggtacagccaatgtagagaaagctactgaggataaacaga
gtagccaggaggtgaaaaaagaaactctctcggaagacaagcctggtcctagttcgtttt
ctaatcagacagaatccgcaataactaccagtagtgctgtagcttttaacccgtttctta
tcccagggatgtctcctggactgatctatccctcaatgtttctttcccctggcatcggca
tggcgctgcccagcatacagcaaaccaggcactcagaggcagcgaatctggaaagccaga
agcggaagagaaagaaagtgaaaggggaattggcaaacccagagccagaaactgtctcgc
tgccagaaaaagaagctgcaaacagtcaaaactgtacagagcaaacacggcctttgtcag
cagagaaagagcaggacggaccagcagaggaggagcgcgaagcggctcgcgataccaatt
ag
DBGET
integrated database retrieval system
