Phalacrocorax carbo (great cormorant): 104053092
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Entry
104053092 CDS
T08596
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03013
Nucleocytoplasmic transport
pcao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104053092 (UPF1)
03015 mRNA surveillance pathway
104053092 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104053092 (UPF1)
Enzymes [BR:
pcao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104053092 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104053092 (UPF1)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104053092 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104053092 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104053092
NCBI-ProteinID:
XP_009512777
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
KDLVTMLGSSRTLSESEMGKAHGRCGSGIKPEQLQGPRGNGCTSHAEIWFVMFVLLGAPS
WWYSVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPA
CVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVF
LLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQL
RARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKL
EADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAP
LWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAV
DETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQG
PPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAI
DSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADV
ICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMC
KKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVK
KGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGI
ITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGF
LNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQ
FSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAG
PSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQ
SNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQID
VALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3323 nt
NT seq
+upstream
nt +downstream
nt
gcaaggacttagttacgatgctaggaagcagtcgcacgctcagcgagtccgagatgggca
aggcacatggcagatgcggcagtggaattaaaccagaacagctgcagggcccgaggggca
acggctgcactagccatgccgaaatctggtttgtgatgttcgtacttcttggtgcccctt
cctggtggtactcggttaatggccctgatggcattctacagaacggagctgtggatgata
acgtggctaaaaccagccagcttctggcagagttgaattttgaagaagatgaagaagata
cctattacacaaaggatcttcctgtgcacgcttgcagttactgtggtatccatgaccctg
cttgtgtggtttactgtaacaccagcaaaaagtggttctgtaatgggcgtggaaatacat
ctggcagccacattgttaatcatctcgtgagagcgaagtgcaaagaggtgactctccata
aagatggacctctaggagagactgtcttggaatgttataactgcggatgtcgtaatgtgt
ttctccttggctttattccagccaaggcagactctgtggtggttttgctgtgcaggcagc
catgtgccagtcagagcagtttaaaggatattaattgggacagctcccagtggcagcctc
ttatccaagatcgctgtttcctttcatggctggtaaagattccatctgaacaggaacagc
tgagagcgcgtcagattacagctcaacagattaacaaactggaagaactctggaaggaaa
atccatctgcaacccttgaggatttagaaaaacctggtgttgatgaagaaccccagcatg
tcctgcttagatatgaagatgcttatcaataccaaaatatatttggtcctctagtcaagc
ttgaggcagactatgacaagaaactcaaggagtctcagacccaagataacatcacggtca
gatgggacctgggcttgaacaagaaaagaatcgcttatttcactttgccaaagactgatt
cagatatgcgtcttatgcaaggagacgagatctgcttgaggtataaaggagacctggccc
ccttatggaaaggaattggtcatgttatcaaagttcctgataattatggtgatgagatag
ccattgagctgaggagcagcgttggagcgcctgtggaagttactcataacttccaagtgg
attttgtatggaagtctacttcgtttgacagaatgcagagtgctttaaaaacctttgccg
tggatgagacttcggtgtctgggtacatctatcacaagctgttaggtcatgaggtagaag
atgtaattattaaatgccagttgccaaagcgctttacagcacaaggacttcctgatctca
accattctcaggtttatgctgtgaagactgtcctgcagcgtcctctgagccttattcagg
gtccccctggtactgggaaaacagtgacatcagccacaatcgtctatcatctggctagac
agggcaatgggcctgtgttagtctgtgctccaagtaatatagctgtagatcagttgaccg
agaagatccatcaaactggactgaaagtggttcgtctgtgtgctaaaagccgcgaggcaa
ttgactctcctgtgtccttcttggcattgcataaccagatcagaaacatggatagcatgc
cagagcttcagaaactgcagcagcttaaagatgaaactggagaactgtcatctgccgatg
agaaacgttaccgtgcgctgaaacgaacagcagagcgcgaattacttatgaatgcagatg
tgatctgttgcacgtgtgtgggagctggtgacccgagacttgcaaaaatgcagttccgct
ccattctgatcgatgaaagcacccaggctaccgagccagagtgtatggtgccagttgtcc
tgggagcaaagcagcttattcttgtgggtgaccactgccagcttggtcctgttgtgatgt
gtaaaaaagctgcaaaggccggcctgtctcagtccctctttgagaggctcgtggtgctgg
ggattcgtcccattcgcctgcaggtgcagtatcgcatgcatcctgccctcagtgcgttcc
catccaatatcttctatgagggttcactccagaacggtgttactgcagcggaccgtgtga
aaaagggttttgatttccagtggccacagccagataagccaatgtttttctatgttacac
aaggacaggaagaaattgccagctcaggcacctcttacttgaacaggacggaagctgcca
atgtggagaagataaccacaaagctattgaaagctggtgccaaaccagatcagattggca
ttattactccttatgaaggtcaacgatcctatctggtgcagtacatgcaattcagtggtt
cattgcatacgaagctctaccaggaagtggaaattgcaagtgtggatgccttccagggac
gagagaaggactttattatcctttcttgtgtgagggccaacgaacaccaaggaatagggt
ttctgaatgaccccaggcgtcttaatgtagcccttacaagagcaagatatggagtaatta
ttgttgggaacccaaaagcgctgtctaaacaaccactttggaatcacctgctgaattact
acaaggagcagaaggttctggtggaaggaccactgaataacctccgggaaagccttatgc
agttcagcaagccccggaaactcgtcaataccatcaacccaggtgcccgtttcatgacga
ctgccatgtatgatgcacgtgaggctattattccaggatctgtctatgaccggagcagtc
aagggcgcccatccaacatgtacttccaaacccacgaccagatcgggatgattagcgccg
gccccagccacgtcactgctatgaacattcctatccctttcaacctcgtgatgccaccga
tgccaccgccgggatactttggccaggcgaatggaccagccgcaggacgtggggcgccaa
aaggaaagactggtcgtggtgggcgccagaaaaatcgttttgggattcctggaactagtc
agtcaaaccttccaaatagtcaggcgagccaagatgtggtgtcccagcctttctcccagg
gtccactgactcaggggtatatctccatgagtcagccatcacagatgagtcagcctgggc
tctcccaaccagaattatcacaggacagttaccttggtgatgagtttaaatctcagattg
acgtggcactgtcacaggactctacttaccagggtgaacgtgcatatcaacatggcggag
tgacgggactgtcacagtattag
DBGET
integrated database retrieval system
