Phalacrocorax carbo (great cormorant): 104053501
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Entry
104053501 CDS
T08596
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03015
mRNA surveillance pathway
pcao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104053501 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
104053501 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104053501 (PABPC1L)
03041 Spliceosome [BR:
pcao03041
]
104053501 (PABPC1L)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104053501 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
104053501 (PABPC1L)
Spliceosome [BR:
pcao03041
]
Complex C
Other components
Complex C specific factors
104053501 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
Motif
Other DBs
NCBI-GeneID:
104053501
NCBI-ProteinID:
XP_009513246
LinkDB
All DBs
Position
Unknown
AA seq
532 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGARAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDTTGRSKGFGFVNFEK
HEEAQKGVNLYVKNLDDGIDDERLKKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPDEA
TKTPPPAYFLPPIPQPQTRATFYSPSPVVPVRPATRWSAQPSRPPPYPAATPILRAAAPP
RRLLSNISTMRQAATQVPRVPPQAQRVANIGTQTVSARVPSSPTLPRSTPQYKYSSSIRN
AQPLGHMQPVLGEPAVHVQGQEPLTASMLAAAPPQEQKQMIGERLYPLIHTMHPTLAGKI
TGMLLEIDNSELLLLLESPDSLRSKTEEAVAVLQAHQATETSHKSSTAVFLQ
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctagcggccctggctatccgttagcctctctctacgtgggagacctccaccca
gatgtgaccgaagccatgctctacgagaagttctcgcctgctgggcccatcatgtccatc
cgagtctgccgggatgttgccacgcgccgatcgctgggctatgcctacataaacttccag
cagcctgtggatgctgagcgagccctggacaccatgaactttgaagtgatcaaaggccgt
cccatccgcatcatgtggtcccagcgggaccctggcctccggaagtcgggggttggaaac
atatttatcaagaatctggatgactccattgataacaaagctctgtacgacacgttctcc
gcctttggaaacatcctgtcgtgcaaggtggtttgtgatgaaaacggatctcgtggctat
ggctttgttcactttgagactcatgaggcagcaactcgggccattgagaccatgaatggg
atgttgctcaatgaccggaaggtgtttgttggccatttcaaatcccgcaaagagcgtgag
gcagagtttggggccagggcgatggagttcaccaatgtctatatcaaaaactttggggat
gacatggatgatgacagactacgggaaatattctctaagtttggaaagacactaagtgtt
aaagtcatgatggacaccactggccgctcaaagggctttggatttgtcaactttgagaag
cacgaagaggcccaaaagggtgtcaacctgtatgtgaagaacctggatgatgggatagac
gatgagaggctgaagaaggagttttctccctacggtaccatcaccagtgctaaggtgatg
acagagggtggccacagcaaagggtttgggtttgtatgtttttcctccccagacgaggct
accaagaccccgcccccagcatactttctaccccccatcccccagccacaaaccagagct
accttctacagccccagcccggttgtcccagtccgtcctgccactcgctggagtgcgcag
ccttcccggcctcccccatatcctgcagctacccccatcctgagggctgctgcaccaccc
cggcgcttgctgtccaacatcagcaccatgagacaggctgccacccaggtgccccgtgtg
cccccccaggcccagagagtggccaacatcgggacgcagacggtcagcgctcgggtgcct
tcctcgcccaccctgccacggagcaccccgcagtacaagtactcctcgtccatcaggaac
gcgcagccgctggggcacatgcagcctgtgctaggagaacctgctgtgcatgtccagggg
caggagccgctgacagcatccatgcttgcagcagcccctcctcaagagcagaagcaaatg
ataggtgagcgcctctaccctctgatccacacgatgcatcccacgctggctggcaagatc
actgggatgctgctggagatagacaactctgagctgctgctgctcctggagtcccctgac
tccctgcgctccaagactgaggaagcggttgctgttctccaagcgcaccaggctacggag
acgtcgcacaagagcagcaccgcggtgttcctgcagtga
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