Pseudoalteromonas carrageenovora: PC2016_0998
Help
Entry
PC2016_0998 CDS
T06565
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC2016_0998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcar03019
]
PC2016_0998
03009 Ribosome biogenesis [BR:
pcar03009
]
PC2016_0998
Enzymes [BR:
pcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PC2016_0998
Messenger RNA biogenesis [BR:
pcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PC2016_0998
Ribosome biogenesis [BR:
pcar03009
]
Prokaryotic type
rRNA helicases
PC2016_0998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
QBJ71232
LinkDB
All DBs
Position
I:complement(1118987..1120828)
Genome browser
AA seq
613 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAHVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKNGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKIVEEKRINALQEKLTLALENKDITFFNEVAANMAQKLELAPEDLA
GALLCLAQQQSPIKVEEVKIQPRERNERNDRNSRNDRGDRGRRNERGGERGGERAERKPR
ERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQN
MPKDVLDHFQKVFICKRPMGMTITQDQGPAEPRGERSERPSGDKKRSFNKDNQRGDKRGG
PRKERRPVSFTSN
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttgaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcacaaacgggtacaggtaaaacagcagcatttgca
ctgccattactaaacaatattgacccgtctgtgaaacagccacagatccttgtactcaca
ccaacacgtgagcttgcgatccaagttgctgaggcatttgaacaatatgcaaaacacact
cgtggtgtagaagtattggcactttatggtggccaaagctacagcattcaattaagcgca
cttcgtcgtggcgcacaaattattgttgcgactcctggtcgcttaattgatcacattaac
cgtggcactatcaagtttgatgctttacaagcacttgtacttgatgaagccgatgaaatg
ttacgtatgggctttatcgatgatgttgaaaacatcatggaaaaaacgccgcgtgaaaag
caaacatgtcttttctctgcgactatgcctaagcaaattcaaaacatcagcagcaaatat
atgaataaccctgaacaggttcatatttctgcgcgtaactctacagtatcatctgttgag
caagtgttttggaacgcacacgtacacaaaaacaaagcgattgttcgtttcttagaagct
gagcaatatgaaggtgctattgttttcgtacgtactcgtaacgacacagttcaacttgct
gaattattagagcgcgaaggtttctctgctgctccacttaacggtgacatgaaccagcaa
gcgcgtgagcgcactgtagatcgcttaaaaaatggcatgctaaacgttgttattgcaaca
gacgtagcagcacgtggtcttgatgtagaccgcttgagcctagttatcaactacgatatt
ccacaagattctgaagcctacgttcaccgtatcggccgtacaggtcgtgctggtcgtact
ggtaaagctattttattcgtaaaacataacgagcgttatttacttaaaaatatcattcgt
catactaagtctgaaattgcacaggttgaactacctacagctaaaatcgtagaagaaaaa
cgtatcaatgcgttacaagaaaagcttacgcttgcacttgaaaacaaagatattacgttc
ttcaatgaagtggctgccaatatggcgcaaaagcttgaactagctcctgaagacttagcg
ggtgcgttattgtgtttagcacagcaacaatcaccaattaaagttgaagaagttaaaatt
caacctcgtgaacgtaacgaacgtaatgaccgcaactcacgcaatgaccgtggtgatcgc
ggacgtcgtaacgagcgcggtggcgaacgtggcggtgagcgtgcagaacgtaaacctcgt
gaacgcaacagccgtgatgctggaccaatggatacttaccgtatcgaagtgggtcgtgag
catggcgtacaggttaaaaacattgttggcgctattgctaacgaagctgacatctcaagc
aagtttattggtgacattcgtcttcacgacagtcacagtacggtacaattaccgcaaaac
atgcctaaagatgtacttgatcacttccaaaaagtgtttatttgtaaacgcccaatgggt
atgacaattacacaagatcaaggccctgctgagccacgtggcgagcgttctgaacgccca
agtggtgataaaaagcgtagctttaacaaagacaaccaacgcggtgataagcgtggcggt
cctcgtaaagaacgtcgcccagtaagcttcacatctaactaa
DBGET
integrated database retrieval system
