Pseudomonas cavernae: D3880_01255
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Entry
D3880_01255 CDS
T08208
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pcav
Pseudomonas cavernae
Pathway
pcav03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D3880_01255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcav03400
]
D3880_01255
Enzymes [BR:
pcav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
D3880_01255
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
D3880_01255
DNA repair and recombination proteins [BR:
pcav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
D3880_01255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
Motif
Other DBs
NCBI-ProteinID:
AYC31096
UniProt:
A0A385YWM9
LinkDB
All DBs
Position
273925..274737
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AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIEPYLKGRRVSRVIVRERRLRWPVPEDLDVRLSGQCIVSVERRAKYL
LIGAEVGTLISHLGMSGSLRLIEQGLPAAKHEHVDIELESGLALRYTDPRRFGALLWSDD
PLNHELLRRLGPEPLTELFDGERLYQLARGKSMAVKPFIMDNAVVVGVGNIYASEALFAA
GIDPRRAAGSISRARYVRLAQEIKRILAQAIECGGTTLRDFVGGDGRPGYFQQELFVYGR
GGEFCQVCGSTLREIKLGQRASVYCPRCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgcctgaagtcgaaaccacccgccgcggcatcgagccctacctcaagggc
cggcgcgtcagccgcgtgatcgtgcgcgaacgccggctgcgctggccggtccccgaggac
ctcgacgtgcgcctgtccggtcagtgcatcgtcagtgtcgagcggcgcgccaagtacctg
ctgatcggcgccgaggtcggcaccctgatcagccatctgggcatgtccggcagcctgcgc
ctgatcgagcagggtctgccggcggccaagcacgagcacgtggatatcgaactggagtcc
ggcctggcgctgcgctacaccgacccgcggcgcttcggcgcgctgctgtggagcgacgac
ccgctcaaccatgagttgctgcgcaggctggggccggagccgctgaccgagttgttcgac
ggcgagcgcctgtaccagctggcgcgcggcaagagcatggcggtcaagccgttcatcatg
gacaacgcggtggtggtcggggtcggcaacatctacgccagcgaggcgctgttcgccgcc
ggcatcgacccgcgccgtgccgccggctcgatctcgcgggcgcgctatgtgcgcctggcg
caggagatcaagcgcatcctcgcgcaggccatcgaatgcggcggcaccaccctgcgcgac
ttcgtcggcggcgatggtcggcccggttatttccagcaggagctgttcgtctacgggcgc
ggcggcgagttctgccaggtctgcggcagcaccctgcgcgagatcaagttaggtcagcgc
gccagcgtgtattgtccgcgctgccaacgctag
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