Pseudomonas cavernae: D3880_14175
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Entry
D3880_14175 CDS
T08208
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcav
Pseudomonas cavernae
Pathway
pcav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D3880_14175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcav03400
]
D3880_14175
Enzymes [BR:
pcav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3880_14175
DNA repair and recombination proteins [BR:
pcav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D3880_14175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYC33432
UniProt:
A0A385Z7D8
LinkDB
All DBs
Position
3110283..3113723
Genome browser
AA seq
1146 aa
AA seq
DB search
MPVLRLPPLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQAAERLEQELGF
FAPELPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
RFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSEQPF
RIDLFDDEIETLRTFDPETQRSIDKVASIRLLPAREFPLDKKAVTDFRGRFRERFDVDFR
RCPIYQDLTSGITPAGIEYYLPLFFEESATLFDYLPQDTQVFSLPGIEQAAEQFWHDVRN
RYEERRVDPERPLLPPGELFLPVEDCFARLKNWPRVIASQEDVEPGVGRERFHARPLPEL
AIQAKAHEPLAALRRFIEEYPGRVLFGAESAGRREVLLELLARLKLKPLEVRGWPEFAAS
GERLAICIAPLDEGLLLDELALIAESPLFGQRVMQRRRREKGRDAGDNVIKNLAELREGA
PVVHIDHGVGRYLGLITLEIDGQAAEFLALMYAEEAKLYVPVASLHLIARYTGSDDALAP
LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFRDPGADYATFSAGFPFEE
TPDQQTAIDAVREDMLAAKPMDRLVCGDVGFGKTEVAMRAAFLAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVTVEVMSRFKSAKEVEGAVRQLAEGKLDIVIGTHKLLQGDVKFH
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPA
RRLSVRTFVMESNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIG
HGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTILIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRQQTTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVH
ARLILYKRIASAADEDGLKELQVEMIDRFGLLPEPTKHLVRLTLLKLQAEKLGINKVDAG
PQGGRIEFAGNTCVDPLTLIKLIQSQPNRYKFEGATLFKFQVPMERPEERFNTLEALFER
LAPQSA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtattgcgccttccccccctgcccgctgcggcgggcaaacagcactggggcaac
ctgccgggtgccgcgctgtctctcgccatcgccgaggccgcgagcgccgccaagcgcttc
accctgctgctgaccgccgatagccaggccgccgagcgtctggagcaggaactcggcttc
tttgctccggagctgccggtgctgcatttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctctaccgtttgccggag
ctgagccacggcgtgctggtagtgccgatcaccaccgccctacaccgcctggcgccgaca
cgcttcctgctcggctccagcctggtgctggacgttggccagaagctggatgtcgagcag
atgcgcctgcgcctggaagcggccggctatcgctgcgtggataccgtctacgagcatggc
gagttcgccgtgcgcggcgcgctgatcgatctatttccgatgggcagcgagcagcccttc
cgcatcgacctgttcgacgacgagatcgagacgctgcgcaccttcgacccggagacccag
cgctcaatcgacaaggtcgcatcgatccgcctgctgccggcccgcgagttcccgctggac
aagaaggccgtcaccgacttccgcgggcgcttccgcgaacgcttcgacgtcgatttccgc
cgctgcccgatctatcaagacctgaccagcggcatcaccccggccggcatcgagtactac
ctgccgctgttcttcgaagaaagcgccaccctgttcgactacctgccgcaggacacccag
gtgttctccctgccgggcatcgagcaggccgccgagcagttctggcacgacgtgcgtaac
cgctacgaggagcgccgcgtcgatccggaacgaccacttttgccgccaggtgaattgttc
ctgccggtcgaggactgcttcgcccgcctgaagaactggccgcgggtgatcgccagccag
gaggatgtcgagcctggcgtcggtcgcgaacgcttccatgcccgcccgctgcccgaactg
gcgatccaggccaaggcccacgagccactcgccgcgctgcgccgctttatcgaggaatat
ccgggccgcgtgctgttcggcgccgaatccgccggccgtcgcgaggtgctgctcgagctg
ctcgcccgcctcaagctgaagccactggaagtccgcggctggccggagtttgccgccagc
ggtgagcgtctggcaatctgcatcgcgccgctggacgagggtctgctgctcgacgagctg
gccctgatcgccgagagcccgctgttcggccagcgcgtcatgcagcgccggcgccgcgag
aaaggccgcgacgccggcgacaacgtgatcaagaacctcgccgagctgcgcgaaggcgcg
ccggtggtgcatatcgaccacggcgtcggccgctatctggggctgatcaccctggaaatc
gacggccaggccgccgaattcctcgccctgatgtacgccgaggaagccaagctctacgtg
ccggtcgccagcctgcacctgatcgcccgctacaccggcagcgacgacgccctcgccccg
ctgcaccggctcggctcggaaacctggcagaaggccaagcgcaaggccgccgagcaggtg
cgcgacgtcgccgccgagctgctcgacatctatgcccgccgcgccgcccgcgagggcttc
gccttccgcgacccgggcgccgactacgccaccttcagcgccggcttccccttcgaggaa
accccggaccagcagaccgccatcgacgccgtacgtgaggacatgctcgcggccaagccg
atggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggccatgcgcgcc
gccttcctcgccgtgcacagcggcaagcaggtggccgtactggtgcccaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgacggtcgag
gtgatgagccgcttcaagtcggccaaggaagtcgaaggcgcggtgcggcagctggccgaa
ggcaagctggatatcgtcatcggcacccacaagctgctgcagggcgatgtgaagttccac
aacctcggcctggtgatcatcgacgaagagcaccgcttcggcgtgcgtcagaaggaacag
ctcaaggcgctgcgcagcgaggtggacatcctcaccctcaccgcgactcccattccgaga
acgctgaatatggcggtgtcgggcatgcgcgacctgtcgatcatcgccaccccgccggcg
cgccggctgtcggtgcgcaccttcgtgatggagtccaacaagcccaccatcaaggaggcc
ttgctgcgcgagctgctgcgcggcggccaggtctactacctacacaacgatgtgaaaacc
atcgagaagtgcgccgccgacctcgccgaactggtgccggaagcgcgcatcggcatcggc
cacggacagatgcgcgagcgcgacctcgaacaggtgatgagcgacttctaccataagcgt
ttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccgagcgccaac
accattctcatcgagcgcgccgacaagttcggcctggcccagctgcaccaattgcgcggc
cgggtcggccgcagccaccaccaggcctatgcctacctgctgacgccgccacgtcagcag
accaccgacgacgcacagaagcgcctggaagccatcgccaatgctcaggacctcggtgcc
ggcttcgtcctcgccacccacgatctggagatccgcggcgccggcgagctgcttggcgat
ggccagagcgggcagatccaggcggtcggcttcacgctttatatggaaatgctcgaacgc
gcggtgaaagccattcgcaagggcgagcagccgaacctcgaacagccgctcggcggcggc
ccggagatcaacctgcgcctgccggcgctgatccccgaggactacctgccggatgtgcat
gcgcgactgatcctctacaagcgcatcgcctcggccgcagacgaggatggcctgaaagaa
ctgcaggtggagatgatcgaccgcttcggcctgctgccggagccgaccaagcacctggtg
cgcctgaccctgctcaagctgcaggcggaaaagctcggcatcaacaaggtcgacgccggc
ccgcagggcgggcgcatcgagttcgccggcaatacctgcgtcgatccgctgaccctgatc
aagctgatccagagtcagccgaaccgttacaagttcgaaggcgccaccctgttcaaattc
caggtgccgatggagcgcccggaagaacgcttcaatacactggaggcgctgttcgagcgc
ctcgcaccgcaatctgcttaa
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integrated database retrieval system
