Pseudomonas cavernae: D3880_15985
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Entry
D3880_15985 CDS
T08208
Name
(GenBank) pseudouridine synthase
KO
K06177
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:
5.4.99.28
5.4.99.29
]
Organism
pcav
Pseudomonas cavernae
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcav03009
]
D3880_15985
03016 Transfer RNA biogenesis [BR:
pcav03016
]
D3880_15985
Enzymes [BR:
pcav01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.28 tRNA pseudouridine32 synthase
D3880_15985
5.4.99.29 23S rRNA pseudouridine746 synthase
D3880_15985
Ribosome biogenesis [BR:
pcav03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D3880_15985
Transfer RNA biogenesis [BR:
pcav03016
]
Prokaryotic type
tRNA modification factors
Psudouridine synthases
D3880_15985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
AYC33762
UniProt:
A0A385Z8B1
LinkDB
All DBs
Position
complement(3507600..3508484)
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AA seq
294 aa
AA seq
DB search
MSISSPVRASTLHLPQGAWSTVLDCLCAHFPAIGREIWLDRMARGRVLDGEGQLITPRHA
YRVGLRVQYFREVANETPIPFVETVLHVDEHLVVADKPHFLPVMPAGEYVEQTLQARLCQ
RLGNPQLVPLHRIDRHTAGLVLFSANPASRARYQALFRERRIDKGYEAIAPALPQLDFPL
LRRTRLDAGEPFFRMQEIAGTPNTETRIEVRERHGDWWRYALYPVTGKKHQLRVHLAALG
APICNDSFYPELTEVAGAADDYARPLKLLAQELAFIDPLSGEPRRFASRLSLDW
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcttccccagtccgtgccagcaccctgcatttgcctcagggcgcatggtcg
accgtgctggactgcctgtgcgcgcacttcccggcgatcggccgcgagatctggctcgac
cgcatggcgcgcgggcgggtgctggatggcgagggccagctgatcacgccgcgccacgct
tatagggtcggcttgcgcgtgcagtatttccgcgaggtggcgaacgagacgccgatcccc
ttcgtcgaaaccgtgctgcatgtcgacgagcatctggtggtggccgacaagccgcatttc
ctgccggtgatgccggctggcgagtacgtcgagcagaccctgcaggcgcgcctctgccag
cgcctgggcaatccgcaactggtgccgctgcatcggatcgaccggcataccgccgggctg
gtgctgttttcggccaacccggcgagccgcgcgcgctaccaggcgctgttccgcgagcgg
cggatcgacaagggctacgaggccatcgccccggccttgccgcagttggacttcccgctc
ctgcgccgcacgcggctggacgccggcgaacccttcttccgcatgcaggaaatagcgggc
acgccgaacacggaaacccgcatcgaggtgcgcgagcgccatggcgactggtggcgctat
gcgctctatccggtgaccggcaagaagcatcagttgcgtgtgcatctggccgcgctgggg
gcgccgatctgcaacgacagcttctaccccgagctgaccgaggtcgcgggcgctgctgac
gactatgcgcgcccgctcaagctgttggctcaggagctggccttcatcgatcccttgagc
ggcgagccgcggcgcttcgccagccggctgagcctggactggtag
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