Pseudomonas cavernae: D3880_17540 Help Entry D3880_17540       CDS       T08208                                  Name (GenBank) DEAD/DEAH box helicase   KO K03724   ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] Organism pcav  Pseudomonas cavernae Brite KEGG Orthology (KO) [BR:pcav00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pcav03400]     D3880_17540 Enzymes [BR:pcav01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      D3880_17540     5.6.2.6  RNA 3'-5' helicase      D3880_17540 DNA repair and recombination proteins [BR:pcav03400]  Prokaryotic type   Other factors with a suspected DNA repair function    DNA helicases     D3880_17540 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD_assoc DEAD Helicase_C ResIII Lhr_WH PhoH AAA_25 Motif Other DBs NCBI-ProteinID:  AYC34053 UniProt:  A0A385Z7W1 LinkDB All DBs Position complement(3860607..3865160) Genome browser AA seq 1517 aa AA seqDB search MTLIPASPASSAAVLDGFHPAVAAWFRATFAAPTAAQVAAWPAIRSGRCTLVAAPTGSGK TLTAFLAAIDELVREGLAQGGQLPDRCTVVYVSPLKALSNDIHINLEEPLVGIRAELQRQ GLADVDIRTAVRTGDTSQAERGALRKRPPHILVTTPESLYVLLGSESGRAMLGGCRSLIV DEIHAIAGSKRGSHLMLSLERLEALCRRRLVRIGLSATQKPIAAVARFLLGSQAPLPLED EPASAQAELEWPGPALALAEPVPGDCVIVDIGYSRARDLALEVPPVPLEAVMSNEVWEKV YDRLAELAGQHRTTLVFVNTRRLAERACRHLSERLGPAAVAAHHGSLAKELRLDAEQRLK RGELRVLVATASLELGIDIGEVELVCQLGSPRSIAAFLQRVGRSGHSVGGTPKGRLFPQS RDELIECAALLDCVRRNELDALVIPQAPLDVLAQQIVAEVACREWSEDGLYRLLTRAAPY VDLPRASFDALLKMLAEGFSGRRGVRAAYLHRDAVNRRLRGRRGARLTAITSGGTIPDAG DYSVSLEPQGLLIGTVNEDFAVESLAGDVFQLGNQSYRILRIEPGKVRVEDAHGLPPSIP FWLGEAPGRSDELSAAVARLREEIEQRLGRVENREAFSTEAVDKHSVVHPTDSGDGGFTL SPSPSPVNGRGGQTEAAVEWLVETIGLNDSAAQQIVEYLARARSALGGLPTQKRLVLERF FDESGGMQLIIHSPFGSRLNRAWGLALRKRFCRSFNFELQAAATEDALILSLSTSHSFPL DEVWRYLHSNTAEHILIQALLDAPLFGVRWRWAATTALALPRFAGGRKVAPQLQRMRSED LLATVFPDQVACQENLVGEREIPEHPLVAQTLDDCLHEAMDCDAWLALLRRMEAGEVELL ARDLPAPSALAAEILSARPYAFLDDAPLEERRTQAVQNRRWRDPESTDELGALDLEAIDA VREEAWPEVRDADEMHEALMALAGITQAEAQAHAGWPAWLAQLAKGKRATCLHLHGQPAL WLPAERLSQWQALYPGAELKPPIVAPAGYDEAWEADAALVEAVRARLSGFGPLPLARIAA DLQQPEAALNLALLALEREGYVLRGRFTPGTSAEEWCERHLLARIHRYTVRRLRREIEPV ERADFMRFLFDWQRVAPATRVRGAEALAGVLGQLEGFQAAAGAWESEILPSRVSDYGINW LDDLCRAGRLVWCRLAGRSRAGGGPLRSTPIVLLPRKSLGLWRAGLAEAPAPELSARAER LRQVLASQGALFFDELQDEAHLLRSELEDSLGELVALGLANADSFAGLRSLLLPAAKRSR HDRRARLALANMQDAGRWALLRPRGEEAGEGQAAALEHVARTLLRRYGVVCWRLLEREAD WLPSWRELLRVYHRLEARGEIRGGRFIAGVTGEQFALPEAVGLLREVRKRPLDGSLIGLS ASDPLNLVGTLLSGAKVPALAGNRLLYRDGVPVASLVAGKTTLLAAADVFTAGEWQAALI RQPMATAFVQGPRRAWQ NT seq 4554 nt NT seq  +upstreamnt  +downstreamnt atgacgcttatccccgcttcgcctgcctccagcgccgcggtgctggacggctttcatccc gcggtcgcggcctggttccgcgccacctttgctgcgccgaccgcggcacaggtcgcggcc tggccggcgatccgcagcggccgctgcaccctggtggccgcgcccaccggctcgggtaag accctcaccgccttcctcgccgccatcgacgaactggtgcgcgaaggcctggcccagggc ggccagctgccggaccgctgcactgtggtctatgtctcgccgctcaaggcgctgtccaac gatatccacatcaacctcgaggagccgctggtcggcatccgcgccgagctgcagcgccag ggcctggcggacgtcgatatccgcaccgcggtgcgcaccggcgacaccagccaggccgag cgcggggcgctgcgcaagcgtccgccgcacatcctggtgaccaccccggaatccctctat gtgctgctcggctccgagtccgggcgggcgatgctcggcggctgtcgcagtctgatcgtc gacgagatccacgccatcgccggcagcaagcgcggcagccatctgatgctcagcctcgaa cgcctggaggcgctgtgccggcggcggctggtgcgcatcggcctgtccgccacgcagaaa ccgatcgcggcggtggcgcgcttcctgctcggcagccaggcgccgttgccgctggaggat gaaccggccagcgcgcaggccgagctggaatggccgggcccggccctggcgctggccgag ccggtgccgggcgactgcgtgatcgtcgacatcggctacagccgtgcccgcgacctggcc ctggaggtgccgccagtgcctctggaagcggtgatgagcaacgaggtgtgggagaaggtc tacgaccgcctggccgagctggccggccagcaccgcaccaccctggtgttcgtcaacacc cgccggttggccgagcgcgcctgccgccatctgtccgagcgcctgggcccggcggcggtc gccgcccaccacggcagcctggccaaggagctgcgcctggacgccgagcagcggctcaag cgcggcgaactgcgggtgctggtggccaccgcctcgctggagctgggcatcgacatcggc gaggtcgagctggtctgccagctcggctcgccgcgcagcatcgccgccttcctgcagcgg gtcgggcgctccggccacagcgtcggcggcacgcccaagggccgcctgttcccgcagtcg cgcgacgagctgatcgaatgcgcggcgctgctcgactgcgtgcgccgcaacgagctggat gcgctggtcattccccaggcgccgctggatgtgctggcccagcagatagtcgccgaggtg gcctgccgcgagtggagcgaggacggcctgtaccggctgctgacccgcgcggcgccctat gtcgacctgccgcgcgcgagtttcgacgcgctgctgaagatgctcgccgagggcttcagc ggtcgccgcggggtgcgcgccgcctacctgcatcgcgatgcggtgaaccgccgcctgcgt ggccgtcgcggcgcccgcctgactgccatcacctccggcggcaccatccccgacgccggc gattacagcgtgtcgctggagccgcaggggctgctgatcggcacggtcaacgaggatttc gccgtcgagagcctggccggcgacgtgttccagctcggcaaccagtcctaccgcatcctg cgcatcgagccgggcaaggtgcgggtcgaggacgcccacggcctgccgccgagcatcccg ttctggctcggcgaggcgccggggcgcagcgacgagctgtcggccgccgtggcgcggctg cgtgaggagatcgagcaacggctgggtagggtggaaaaccgcgaagcgttttccaccgag gcggtggacaagcacagcgttgtccaccctacggactccggtgacggtggttttaccctc tcccccagcccctctcccgtaaacgggagaggggggcagaccgaggctgctgttgagtgg ctggtggagaccatcggcctgaacgactcggcggcgcagcagatagtcgagtacctggcc cgggcgcgcagcgctctcggtggcctgcccacccagaagcgcctggtgctggagcgcttc ttcgacgaatccggtggcatgcagctgatcatccactcgccgttcggcagccggctcaac cgcgcctggggcctggccctgcgcaagcgcttctgccgcagcttcaacttcgaactgcag gccgccgccaccgaggacgcgctgatcctctcgctgtccaccagccacagcttcccgctc gatgaggtgtggcgttacctgcactccaacacggccgagcacattctcatccaagcgcta ctggatgcgccgctgttcggcgtgcgctggcgctgggccgccaccaccgcgctggccctg ccgcgcttcgccggtggccgcaaggtggcgccgcagctgcagcgcatgcgcagcgaggac ctgctggccacggtgttccccgaccaggtggcgtgccaggagaacctggtcggcgaacgc gagattcccgagcacccgctggtggcgcagaccctcgacgactgcctgcacgaggccatg gactgcgacgcctggctggctctgctgcggcgcatggaggccggcgaagtcgagctgctg gcccgcgacctgccggcgccctcggcgctggcggcggaaatcctcagcgcccggccctat gccttcctcgacgacgcaccgctggaggagcgccgcacccaggcggtgcagaaccgccgc tggcgcgacccggaatcgaccgacgagctcggcgcgctggatcttgaggccatcgacgcg gtgcgcgaggaagcctggcccgaggtgcgcgatgccgacgagatgcacgaggcgctgatg gccttggccggtatcacccaggccgaggcgcaggcccatgccggctggccggcctggttg gcgcaactggccaagggcaaacgcgccacctgtctgcacctccatggccagccggctttg tggctgccggccgagcgcctgagtcaatggcaggcgctgtatcccggcgccgagctcaag ccaccgatcgttgcgccggccggctacgacgaagcctgggaagcggacgcggcgctggtg gaagcagtgcgtgcgcgcctgagtggcttcggcccgctgccgttggcgcggatcgccgcc gacctgcagcagccggaagcggcgctgaacctcgccctgctggccctggagcgcgaaggc tatgtgctgcgtggacgcttcacgccggggacaagtgcggaggagtggtgcgagcgccat ctgctggcgcgcatccatcgctacacggtcaggcgcctgcgccgcgagatcgagccggtc gagcgcgccgacttcatgcgtttcctgttcgactggcagcgcgtcgccccggccacgcgg gtgcgcggcgccgaggcgctggccggcgtgctcggccagctggaaggcttccaggccgcg gccggcgcctgggaaagcgaaatcctgccgagccgggtcagcgactacggcatcaactgg ctggacgacctgtgccgcgccggccgcctggtctggtgccggctggccgggcgcagccgc gccggcggcgggccgctgcgcagcacgccgatcgtcctcttgccacgcaagagcctcggc ctgtggcgcgccggtctggccgaggcgccggcgcccgagctgtcggcccgcgccgagcgc ctgcgccaggtactggccagccagggcgcgctgttcttcgacgagctgcaggacgaggcg cacctgctgcgcagcgaactggaagacagcctcggcgaactggtggcgctcggcctagcc aacgccgacagcttcgccggcctgcgctcgctgctgctgccggcggccaagcgcagccgc cacgaccgtcgcgcgcgcctggccctggccaacatgcaggatgccgggcgctgggccttg ctgcgcccgcgcggcgaagaggcgggcgagggccaagccgcggcgctggagcatgtggcg cgcaccctgctgcgccgctacggcgtggtctgctggcgcctgctcgagcgcgaggccgac tggctgccgtcctggcgcgagctgctgcgcgtctatcaccgcctggaagcgcgcggcgag attcgcggcgggcgcttcatcgccggcgtcaccggcgagcagttcgccctgccggaagcg gtcggcctgctgcgcgaggtgcgcaaacggccgttggacggcagcctgatcggcttgtcc gccagtgatccgttgaacttggtgggcacgctgctgagcggcgccaaggtgccggcgctg gccggcaatcgcctgctgtaccgcgacggcgtgccggtggccagcctggtcgctggcaag actacgctgctggcggcggcggatgttttcaccgccggcgaatggcaggccgcgctgatc cgccagcccatggcgacggccttcgtccaggggccgcggcgggcctggcagtag

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