Pseudomonas carboxydohydrogena: AFIC_002308
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Entry
AFIC_002308 CDS
T08963
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcax
Pseudomonas carboxydohydrogena
Pathway
pcax03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AFIC_002308 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcax03400
]
AFIC_002308 (ligD)
Enzymes [BR:
pcax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AFIC_002308 (ligD)
DNA repair and recombination proteins [BR:
pcax03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AFIC_002308 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WEF50759
LinkDB
All DBs
Position
2392246..2394903
Genome browser
AA seq
885 aa
AA seq
DB search
MARKKLSVYRTKRDFTKTAEPSGAAKVTRGKLPRFVIQKHDATRLHYDLRLEFDGVFKSW
AVTRGPSLDPKDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWYSDNPEAGF
KKGDLKFALEGEKLHGEWVLVRMRHDRNGGKRTNWLLIKHRDEYAREGKKNDILDEERSV
ASGRTMAQIAQGKGRGPTPFMTAKGSLKGGRTKADRVWQSNQGMAANLRAKSATKTLAPS
KGRAPAKIARKAERLPDFIAPQLCKSVSRPPNGGEWIHEIKFDGYRMQLRVESKKATLRT
RKGLDWTAKFPAIAKAAARLPDGIIDGEIVALDHNGHPSFASLQTALSDSNTDELVFFAF
DLLFSKDADLRRLPLSERKAYLKAILKNGTGSGVIRYVEHFESGGDAILKSACRLSLEGI
ISKRADALYHSGRTESWRKAKCRAGHEVVIGGWKTTDGKFRSLMVGVPHEDHLAYVGIVG
TGYGKDVVKRIMPELKKAGSTTNPFGGNNAPKKTPDVHWVKPELVAEIEFAGWTGDNMVR
QAAFKGLRKDKSADEVRVDEPAVTTVAKPVPRKTRAAKSAGAPSKGNAVVMGLTVSKPDK
PLWPDDGKGEPITKLDLARYMEDIGTHLLPHIKGRPCSIIRAPDGIDGETFFQRHAMAGM
SNLIGEVRVSGDRKPYIQIDRIEGLVAAAQIGGIEFHPWNCAEGEPDVPGRLVFDLDPAP
DVAFTEVIKAARDMHERLSSLGLENFCKTTGGKGLHVVTPLKDAKKDRIDWKTAKAFAQA
VCQAMAADEPERYLLNMSKKKREGKIFLDYLRNDRMSTAVAPFSPRGRKFAPVSMPLTWA
QVRPGLDPLTFTLRTVPGLVRTSKAWTDYARAARSLKSAIKKTGL
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
gtggcacgcaaaaaactctcggtctatcgcaccaaacgcgacttcacgaaaaccgctgag
ccgagcggtgccgcgaaagtgacgcgcggaaaactgccgcgcttcgtcatccagaagcat
gacgccacccggctgcactacgacctgcggctcgagttcgacggcgtcttcaaatcatgg
gcggtgacgcgcggcccatcgctcgacccgaaggacaagcgcctcgcggtcgaggtcgag
gatcacccgctcgattacggcgacttcgaaggtacgatcccgaagggccagtacggcggc
ggcacggtgatgctgtgggatcgcggctattggtacagcgacaatccggaagcaggtttc
aagaaaggcgatctgaaattcgcgctcgaaggcgaaaagttgcacggcgaatgggtgctg
gtgcggatgcgccatgaccgcaacgggggcaaacgcaccaactggcttctcatcaagcat
cgcgatgaatacgcgcgcgaaggcaagaagaacgacattctcgacgaggagcgctccgtt
gcctccggccgtacgatggcgcagatcgcgcaaggcaaggggcgcggaccgacgccgttc
atgacggccaaaggcagcttaaaaggaggccgcacaaaggccgaccgggtctggcaatcc
aatcagggcatggccgcgaatctgcgggcgaaatccgcgacgaagaccctcgctccctcc
aaagggagagcaccggcgaagatcgcgcgcaaggcagagcgactccccgacttcattgca
ccgcaattgtgcaaatccgtctcgcgcccgcccaacggtggcgaatggattcacgagatc
aaattcgacggctaccggatgcagctgcgcgtcgagagcaagaaggccaccttgcgaacg
cgcaagggcctcgactggaccgcgaaatttccggccatcgcgaaagccgccgcgcggctt
ccggacggcatcatcgacggcgagatcgtcgccctcgaccacaacgggcatcccagtttc
gcctcgctgcaaacggcactctccgacagcaacactgatgaactggtcttcttcgcgttc
gaccttcttttcagcaaggacgccgacctgcggcgactacccctgagcgaacgcaaggca
tacctgaaagcaatcctgaagaacggcaccggcagcggcgtgatccgttatgtcgagcac
ttcgagagcggcggcgacgcgatcctgaaatcggcctgccgcctgtcgctggaaggcatc
atctcgaagcgtgccgatgcgctctatcattcgggccgcacagaaagctggcggaaagcc
aaatgccgcgccggccacgaggtcgtgatcggcggctggaaaaccactgacggcaaattc
cgctcgctgatggttggcgtgccgcacgaggatcatctcgcctatgtcggcatcgtcggc
accggatacggcaaggatgtcgtcaagcggatcatgccggaattgaagaaggccggctca
acaacgaatccgttcggcggcaacaacgcgccgaagaaaacccccgatgtgcactgggtc
aaaccagagcttgtcgccgaaatcgaattcgcgggctggaccggcgacaacatggtgcgg
caggccgcgttcaagggactgcgcaaggacaagtccgccgacgaagtgcgggtagacgag
cccgccgtcaccaccgtcgccaagcctgtgccgcgcaaaacacgcgcggcgaaatccgca
ggcgcgccgtccaaaggcaacgccgtggtgatgggcctgaccgtctccaaaccggacaag
ccgctctggccggacgacggcaagggcgagccgatcaccaagctcgatcttgcccgctat
atggaagatatcggcacgcatctgctgccgcatatcaaagggcggccctgctccatcatc
cgcgcgccggacggcatcgatggcgagacattcttccagcgccacgccatggccggcatg
tcgaacctgatcggcgaggtgcgcgtctccggcgaccgcaagccttatatccagatcgac
cgcatcgaaggacttgtcgcggcggcgcagatcggcggcatcgaatttcatccatggaat
tgcgccgaaggcgagccagacgtgccgggccgtctggtgttcgatctcgaccccgcgccg
gatgttgccttcaccgaagtcatcaaggccgcgcgcgacatgcatgagcgcctttcatcc
cttgggctggaaaatttctgcaagaccaccggcggcaagggattgcatgtcgtcacgcct
ttgaaggatgcgaagaaggatcgcatcgattggaaaacggcgaaggcatttgcgcaggcc
gtgtgtcaggcgatggcggcggacgaaccggagcgctatctgctcaacatgtcgaagaag
aaacgcgagggaaagatcttcctcgactacctgcgcaacgaccggatgtcgacggcggtg
gcgccgttctcgccacggggacgcaagttcgcgccggtgtcgatgccgctgacatgggct
caggtgcgccccggtctcgatccgctaaccttcacgctgcgcaccgtgcccggattggtg
aggacatcgaaggcatggacggactatgcccgcgccgcgcgctcgctcaagagcgcaatc
aaaaagaccggactataa
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