KEGG   Pseudomonas carboxydohydrogena: AFIC_002308
Entry
AFIC_002308       CDS       T08963                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pcax  Pseudomonas carboxydohydrogena
Pathway
pcax03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pcax00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AFIC_002308 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pcax03400]
    AFIC_002308 (ligD)
Enzymes [BR:pcax01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AFIC_002308 (ligD)
DNA repair and recombination proteins [BR:pcax03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AFIC_002308 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: WEF50759
LinkDB
Position
2392246..2394903
AA seq 885 aa
MARKKLSVYRTKRDFTKTAEPSGAAKVTRGKLPRFVIQKHDATRLHYDLRLEFDGVFKSW
AVTRGPSLDPKDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWYSDNPEAGF
KKGDLKFALEGEKLHGEWVLVRMRHDRNGGKRTNWLLIKHRDEYAREGKKNDILDEERSV
ASGRTMAQIAQGKGRGPTPFMTAKGSLKGGRTKADRVWQSNQGMAANLRAKSATKTLAPS
KGRAPAKIARKAERLPDFIAPQLCKSVSRPPNGGEWIHEIKFDGYRMQLRVESKKATLRT
RKGLDWTAKFPAIAKAAARLPDGIIDGEIVALDHNGHPSFASLQTALSDSNTDELVFFAF
DLLFSKDADLRRLPLSERKAYLKAILKNGTGSGVIRYVEHFESGGDAILKSACRLSLEGI
ISKRADALYHSGRTESWRKAKCRAGHEVVIGGWKTTDGKFRSLMVGVPHEDHLAYVGIVG
TGYGKDVVKRIMPELKKAGSTTNPFGGNNAPKKTPDVHWVKPELVAEIEFAGWTGDNMVR
QAAFKGLRKDKSADEVRVDEPAVTTVAKPVPRKTRAAKSAGAPSKGNAVVMGLTVSKPDK
PLWPDDGKGEPITKLDLARYMEDIGTHLLPHIKGRPCSIIRAPDGIDGETFFQRHAMAGM
SNLIGEVRVSGDRKPYIQIDRIEGLVAAAQIGGIEFHPWNCAEGEPDVPGRLVFDLDPAP
DVAFTEVIKAARDMHERLSSLGLENFCKTTGGKGLHVVTPLKDAKKDRIDWKTAKAFAQA
VCQAMAADEPERYLLNMSKKKREGKIFLDYLRNDRMSTAVAPFSPRGRKFAPVSMPLTWA
QVRPGLDPLTFTLRTVPGLVRTSKAWTDYARAARSLKSAIKKTGL
NT seq 2658 nt   +upstreamnt  +downstreamnt
gtggcacgcaaaaaactctcggtctatcgcaccaaacgcgacttcacgaaaaccgctgag
ccgagcggtgccgcgaaagtgacgcgcggaaaactgccgcgcttcgtcatccagaagcat
gacgccacccggctgcactacgacctgcggctcgagttcgacggcgtcttcaaatcatgg
gcggtgacgcgcggcccatcgctcgacccgaaggacaagcgcctcgcggtcgaggtcgag
gatcacccgctcgattacggcgacttcgaaggtacgatcccgaagggccagtacggcggc
ggcacggtgatgctgtgggatcgcggctattggtacagcgacaatccggaagcaggtttc
aagaaaggcgatctgaaattcgcgctcgaaggcgaaaagttgcacggcgaatgggtgctg
gtgcggatgcgccatgaccgcaacgggggcaaacgcaccaactggcttctcatcaagcat
cgcgatgaatacgcgcgcgaaggcaagaagaacgacattctcgacgaggagcgctccgtt
gcctccggccgtacgatggcgcagatcgcgcaaggcaaggggcgcggaccgacgccgttc
atgacggccaaaggcagcttaaaaggaggccgcacaaaggccgaccgggtctggcaatcc
aatcagggcatggccgcgaatctgcgggcgaaatccgcgacgaagaccctcgctccctcc
aaagggagagcaccggcgaagatcgcgcgcaaggcagagcgactccccgacttcattgca
ccgcaattgtgcaaatccgtctcgcgcccgcccaacggtggcgaatggattcacgagatc
aaattcgacggctaccggatgcagctgcgcgtcgagagcaagaaggccaccttgcgaacg
cgcaagggcctcgactggaccgcgaaatttccggccatcgcgaaagccgccgcgcggctt
ccggacggcatcatcgacggcgagatcgtcgccctcgaccacaacgggcatcccagtttc
gcctcgctgcaaacggcactctccgacagcaacactgatgaactggtcttcttcgcgttc
gaccttcttttcagcaaggacgccgacctgcggcgactacccctgagcgaacgcaaggca
tacctgaaagcaatcctgaagaacggcaccggcagcggcgtgatccgttatgtcgagcac
ttcgagagcggcggcgacgcgatcctgaaatcggcctgccgcctgtcgctggaaggcatc
atctcgaagcgtgccgatgcgctctatcattcgggccgcacagaaagctggcggaaagcc
aaatgccgcgccggccacgaggtcgtgatcggcggctggaaaaccactgacggcaaattc
cgctcgctgatggttggcgtgccgcacgaggatcatctcgcctatgtcggcatcgtcggc
accggatacggcaaggatgtcgtcaagcggatcatgccggaattgaagaaggccggctca
acaacgaatccgttcggcggcaacaacgcgccgaagaaaacccccgatgtgcactgggtc
aaaccagagcttgtcgccgaaatcgaattcgcgggctggaccggcgacaacatggtgcgg
caggccgcgttcaagggactgcgcaaggacaagtccgccgacgaagtgcgggtagacgag
cccgccgtcaccaccgtcgccaagcctgtgccgcgcaaaacacgcgcggcgaaatccgca
ggcgcgccgtccaaaggcaacgccgtggtgatgggcctgaccgtctccaaaccggacaag
ccgctctggccggacgacggcaagggcgagccgatcaccaagctcgatcttgcccgctat
atggaagatatcggcacgcatctgctgccgcatatcaaagggcggccctgctccatcatc
cgcgcgccggacggcatcgatggcgagacattcttccagcgccacgccatggccggcatg
tcgaacctgatcggcgaggtgcgcgtctccggcgaccgcaagccttatatccagatcgac
cgcatcgaaggacttgtcgcggcggcgcagatcggcggcatcgaatttcatccatggaat
tgcgccgaaggcgagccagacgtgccgggccgtctggtgttcgatctcgaccccgcgccg
gatgttgccttcaccgaagtcatcaaggccgcgcgcgacatgcatgagcgcctttcatcc
cttgggctggaaaatttctgcaagaccaccggcggcaagggattgcatgtcgtcacgcct
ttgaaggatgcgaagaaggatcgcatcgattggaaaacggcgaaggcatttgcgcaggcc
gtgtgtcaggcgatggcggcggacgaaccggagcgctatctgctcaacatgtcgaagaag
aaacgcgagggaaagatcttcctcgactacctgcgcaacgaccggatgtcgacggcggtg
gcgccgttctcgccacggggacgcaagttcgcgccggtgtcgatgccgctgacatgggct
caggtgcgccccggtctcgatccgctaaccttcacgctgcgcaccgtgcccggattggtg
aggacatcgaaggcatggacggactatgcccgcgccgcgcgctcgctcaagagcgcaatc
aaaaagaccggactataa

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