Plasmodium chabaudi: PCHAS_1204400
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Entry
PCHAS_1204400 CDS
T01108
Name
(RefSeq) regulator of nonsense transcripts 1, putative
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03013
Nucleocytoplasmic transport
pcb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PCHAS_1204400
03015 mRNA surveillance pathway
PCHAS_1204400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_1204400
Enzymes [BR:
pcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PCHAS_1204400
5.6.2.5 RNA 5'-3' helicase
PCHAS_1204400
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PCHAS_1204400
mRNA cycle factors
Common to processing body (P body) and stress granule
PCHAS_1204400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
PhoH
PIF1
SLFN-g3_helicase
SRP54
AAA_16
AAA_22
AAA
AAA_25
Motif
Other DBs
NCBI-GeneID:
3497078
NCBI-ProteinID:
XP_016654163
UniProt:
A0A4V6M9H5
LinkDB
All DBs
Position
12:complement(155803..159582)
Genome browser
AA seq
1259 aa
AA seq
DB search
MNRARNCSQIDVDTFYDLYNIVDTKRDKINHKSKHNEESNFNDLFEYELKNEMKGMKQSS
HRKGIGEKIKNTKYVNQTNFRKNNSSNNYLCELSEKKTSNFDIDENRIHKLVPFSDACSD
VESYAMSWNESHLRGYTESSADDMNRQENDKDGYKKVSKENAYLKNEKIKKNLNKKKGKR
KDDNCYSSQIVQEYGEKQNKGVANNYGDSNDDFEEDELKYYRCRYCEIDSIDSVVQCNTC
ERWFCNGSYGTCGSHIVTHLVRSKHKEIKLHKNSLLGETILECYNCGCRNVFLLGFLPTL
EEGVVIIICRDPCLAYYISLNKKDDDNVMKRKVSSQDEESEGETKIKECNLEKWQPIIED
RCFLEWLVNIPTKEEAEKKGKLITSVNVNKLEEFWKNKKDVYINELDLKILDDEPKKVKL
KYTDAIDYKLTFSPLIQLESNYDKSIKEGHKQTNVRIRWDVGLNKKRYAYFVYIKEESEL
RIVVGDELKISYAYPNGNIWSCEGHISRLNNNEEIALELKVLYNIDGPWNDNINTGFVVE
FVWKSTAYDRMQLALNEFAFNSFSLSGHLYHKLLGHDIIDEPINYNKKEFSLNSDSKKYG
YNKKSNDNFSTSYKIVNYSAPNLAPLNHSQIDAIQKSLNSPLSLIQGPPGTGKTLTCATL
VYHMHKTKMGGKVLVTAPSNVAVDQLSVRIHRTGLKVVRLCARSRESVSSIADYLYLHNQ
VKLLKTDVGEELNKLLELKEEVGELSQKDENRLKKLILHAEYKILIEADVICTTCVGAMD
KRLKKFRFNQVLVDEATQSTEPECLVPLVTGAKQIVLVGDHCQLGPIIVCKKAASAGLGK
SLFERLVMLGITPFRLEVQYRMHPCLSEFPSYVFYDGCLQNGITLKEREYPLKNFPWPNS
KYPMFFYNSNGLEEMSASGTSYLNRSEAQNMEILVRALLNSGLKATQIGVITPYEGQRAY
ITSLFQKNISYQHCLDIEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRRLNVALT
RAKYGLIICGNAKVLSRHHFISKEKLNSNETITNVNSVWINLLNQFKKKNLIVEGCLSNL
KSITINIPAPIKQPSKYINFDYFHDLKDINSKIYDKEINRYTKDYGNSKDNYKFRYQRAN
SLLSQNMSNSSICNESIIDQDIYNFINERKGKNRYSLNSYINNFSQLSQSNGSMTDEIPN
LRGISSAESVEDADFNFSQISSNFNETNFDSKIDSKNGDIFPYLFYQDSDNNRHNKGIH
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atgaatagggcacggaattgtagtcagatagatgtagacaccttttatgatctatacaat
atagtggatacaaaaagggataagataaatcataagagcaagcataatgaagaatccaat
tttaatgacttatttgaatatgaattaaaaaatgaaatgaaggggatgaaacaaagtagt
cataggaaaggtattggcgaaaaaattaagaatacgaaatatgtaaatcaaacaaatttt
agaaaaaataatagctcaaataattatttatgtgaattatctgagaaaaagacatcaaat
tttgatatagatgaaaatagaatccataaattagtaccattttcagatgcatgttcagat
gtagaatcatatgccatgtcatggaatgaatcacatctaagaggttacactgaatcaagt
gcagatgatatgaatagacaagaaaatgataaagatggttataaaaaggtgagtaaagaa
aatgcatatttaaagaatgaaaaaataaaaaaaaacttaaataaaaaaaaagggaaaaga
aaagatgataattgttattcctctcaaattgtacaagagtatggagagaaacaaaataaa
ggtgttgcaaataattatggtgacagtaatgacgattttgaagaagatgaattaaaatat
tatagatgcagatattgtgaaatagattctatagatagtgttgttcaatgtaatacatgt
gaaagatggttttgtaatggatcatatggaacatgtggaagccatattgttacacatcta
gttcgatcgaagcataaagaaataaaattacataagaacagtttacttggcgaaacaata
ttagaatgctataactgtggatgtagaaatgtttttttattaggttttttacctacatta
gaagaaggggtagtaattattatatgtcgagatccctgtttagcatattacatttcttta
aataaaaaagacgatgataatgtgatgaaaagaaaagtgtctagtcaagatgaagaaagc
gaaggagaaacaaaaataaaagaatgtaatttagaaaaatggcaaccaattatagaagat
agatgttttttagaatggctagtaaatataccaacaaaagaggaagcagaaaaaaaaggg
aaattaataacatctgtaaatgtaaataaattagaagaattttggaaaaataaaaaagat
gtatatataaatgaattagatttaaaaatattagatgatgaacccaaaaaagttaaatta
aaatatacagatgcaatagattataaattaacattttctccattgattcaattagaatca
aattatgataaatcaataaaggaaggacataagcaaacaaatgtgagaatacgatgggat
gtaggattaaataaaaaaaggtatgcatattttgtatatattaaagaagaaagtgaatta
agaatagttgtaggagacgaattaaaaatatcatatgcttatccaaatggtaatatatgg
agttgtgaaggtcatatatcaagattaaataataatgaagaaatagcgttagaattaaaa
gtattatataatatagatggaccatggaatgataatataaatactgggtttgttgttgag
tttgtttggaaaagtactgcttacgatcgtatgcaattagctctaaacgagtttgctttt
aattcattttctttaagtgggcatttatatcacaaattattagggcatgatataattgat
gaacctataaattataacaagaaagagtttagcttaaatagtgatagtaaaaaatatggc
tataacaaaaaatcaaatgataatttttctacttcctataaaattgtaaattattctgct
cctaatttagctccattaaatcattcgcaaatagatgcaattcaaaaaagtttgaactca
ccactttcattaatacaaggtccaccaggtacaggaaaaacattaacatgtgcaacttta
gtatatcatatgcataaaaccaaaatgggagggaaagttttagttactgctccaagtaat
gtagctgtagatcaattatctgttcgtattcatagaaccggattaaaagttgtaaggcta
tgtgctagaagcagagaatcagtatctagtatagccgattatttgtatttacataatcaa
gtgaaattgcttaaaacagatgtaggagaggaattaaataaattattagaattaaaagaa
gaagtaggtgaattgtctcaaaaagatgagaatcgattaaaaaaattaattttacatgct
gaatataaaatattgatagaggcagatgtaatatgtactacatgtgtaggagcaatggat
aagagactaaaaaaatttcgttttaatcaggtgttagttgatgaagcaacacaatcaacg
gaaccagaatgcttagttccattagttacaggagcaaaacaaatagtattagttggtgat
cattgtcaattagggcctatcattgtatgtaaaaaagcagcaagtgctggattaggaaaa
agtttatttgaaagacttgttatgttaggtattacaccatttaggttggaagtacaatat
agaatgcatccttgtttaagtgaatttccatcttatgtattttatgatggatgtttacaa
aatggtattacattaaaagaaagagagtatcctttaaagaactttccatggcccaattct
aaatatcctatgtttttttacaattctaatgggcttgaagaaatgtctgcatctggtaca
agctacttaaatagaagcgaagcacaaaatatggaaattttagtaagagctttattaaat
tcaggattgaaagcgacacaaattggtgttataactccttatgaaggtcaaagagcatat
attacttcgctttttcaaaaaaacatttcttatcaacattgtttagatatagaagttgca
tctgtagatgcattccaaggaagagaaaaagattttattcttttatcatgtgtcagatca
aataaaaagttaggtattggatttttaaatgatccaagaagattaaatgttgcattaaca
agagcaaaatatggattaatcatttgtggtaatgcaaaagttttatctagacatcatttt
atttctaaagaaaaattaaattccaatgaaactattacaaatgttaattcagtttggatt
aacttattaaatcaatttaaaaaaaaaaatttaattgttgaaggatgtttatctaactta
aagtcgataacaattaatataccagccccaattaaacagccatcaaaatatatcaatttt
gattattttcacgatttgaaagatataaatagcaaaatatatgataaagaaataaataga
tatacaaaggattatggaaatagtaaagataattacaaatttagatatcaaagagctaat
tctcttttaagtcaaaatatgtcaaatagtagcatatgcaatgaatcaattattgatcaa
gatatttataattttattaatgaaagaaaaggaaaaaatcgatactcccttaattcatat
attaacaattttagtcagctatcccaatccaatggtagtatgactgatgaaattccaaac
cttagggggattagtagtgctgaaagtgttgaagatgccgattttaactttagccaaata
agtagcaattttaatgaaaccaactttgatagtaaaatcgattcgaaaaacggagacata
tttccatatctattttatcaagacagcgataacaatcggcacaataagggtatccactag
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integrated database retrieval system
