Plasmodium chabaudi: PCHAS_1415200
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Entry
PCHAS_1415200 CDS
T01108
Name
(RefSeq) general transcription factor IIH subunit 2, putative
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03022
Basal transcription factors
pcb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PCHAS_1415200
09124 Replication and repair
03420 Nucleotide excision repair
PCHAS_1415200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcb03021
]
PCHAS_1415200
03400 DNA repair and recombination proteins [BR:
pcb03400
]
PCHAS_1415200
Transcription machinery [BR:
pcb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PCHAS_1415200
DNA repair and recombination proteins [BR:
pcb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PCHAS_1415200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Tfb4
IBR
zinc_ribbon_15
Motif
Other DBs
NCBI-GeneID:
3498464
NCBI-ProteinID:
XP_016654861
UniProt:
A0A4V0KEG6
LinkDB
All DBs
Position
14:569396..571083
Genome browser
AA seq
401 aa
AA seq
DB search
MQNSQNIDNKAIFVEEVVRDFDQNEVFEEITTKFVWEQDVERSWNLLVENNGILQHVNQE
TYEEKNKQKYKKNQTCSLRKGIFRNVIILFDMSSSMTERDFKPNRITVILECVEIFLKNF
FFKNPVGHVGVVALKNSSAKLIQQLTSNIDDVLNSLVKEQKEGLQGSPSLQEGLEIAHNL
LMDMPLYGTKEILIMYGSIRTCDKKNILKYLDLLIKNNMYVNCISIAPEMHILKHICEKT
HGIYKICTSKNILINEINQVAETPLWMHGMEPQLIHICFPVKKKINTQIVCSCHNTLNTD
TYICNFCNSYTCKIPSKCKVCGIHLISMHDLSHITNNLQASPLFIEIKNEQNYYTYCSSC
NQQLYDKVSQCTKCKNIFCLECDVFIHEDLNQCPFCLNDDD
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattcccaaaatattgataataaagccatttttgttgaagaggttgtaagagat
tttgatcaaaatgaagtgttcgaagaaataacgacaaaatttgtctgggagcaagatgtg
gaacgatcatggaatttacttgttgaaaataacggtatattacaacatgtcaatcaggaa
acatatgaagaaaaaaataaacaaaaatataaaaagaaccaaacttgctcactaagaaaa
ggaatattcaggaacgtaataatattatttgacatgtcaagtagcatgacagaacgggat
ttcaagccaaacaggataaccgttatcctcgaatgcgttgagatatttctcaaaaatttt
tttttcaaaaacccggtggggcatgttggagtagtagcattgaagaacagctcagcaaaa
ttaattcaacaattgacatcaaatatagacgatgttttaaactcattagtaaaggaacaa
aaggaaggacttcaaggatctccatcattacaagaaggactagaaattgctcataattta
ttaatggatatgcctttatatggaacaaaagaaatattaattatgtatggatctataagg
acatgtgataaaaaaaatatattaaaatatttagatttattaataaaaaataatatgtat
gtaaattgtatatcaatagctcctgaaatgcatatattaaaacatatttgtgaaaaaaca
catggtatttacaaaatatgtacaagtaaaaatattttaataaatgaaataaatcaagtt
gctgaaactccattatggatgcatggaatggaacctcaattaattcatatatgttttcca
gtaaaaaaaaaaattaacacacaaattgtatgctcttgtcataatactttaaatactgat
acatatatttgcaacttttgtaatagttatacatgtaaaataccatctaaatgtaaagta
tgtggtattcatttaatttcaatgcatgatctttcacatattactaacaatcttcaagca
tctccattatttattgaaattaaaaacgaacagaattattacacatattgttcatcatgt
aatcaacagttatatgataaagtatctcaatgcactaaatgtaaaaatattttttgtttg
gaatgtgatgtttttattcatgaagatttaaatcaatgtcctttttgtttaaatgatgac
gactaa
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