Plasmodium chabaudi: PCHAS_1459800
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Entry
PCHAS_1459800 CDS
T01108
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2, putative
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03022
Basal transcription factors
pcb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PCHAS_1459800
09124 Replication and repair
03420 Nucleotide excision repair
PCHAS_1459800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcb03021
]
PCHAS_1459800
03400 DNA repair and recombination proteins [BR:
pcb03400
]
PCHAS_1459800
Transcription machinery [BR:
pcb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PCHAS_1459800
DNA repair and recombination proteins [BR:
pcb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PCHAS_1459800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
3497884
NCBI-ProteinID:
XP_744765
UniProt:
A0A4V0KD61
LinkDB
All DBs
Position
14:complement(2195669..2198437)
Genome browser
AA seq
922 aa
AA seq
DB search
MVKARKNIENMEIYDYMKEMDAKIWEYLFDDSLAHETIFNSLNELEQIIISRLLFIQQVV
SERAMRLWINPNFLKKLSESIKNLVDVKILVESETKKDNYNQYKINDRFRLTLLNKIYQN
DKSNIFIFNNNIKLQLNKEKELYEKKLFPTKEGILCYASARWNTLLHFIASPNLNSYKYS
HSYSGSYASTYPHSSSIHGGIDSPIKTEMGTSIDPNNVHSYGGEYSYNNSLKSVKVEKGN
YYGTQTKKSRKNNEDSDEEYQPYGDEMYDDENYENESFSQRRKYKSYGEYENTGNDSEYD
EDEGYEDESNEQYDNQTRNKYSQNYNDIENSNSGKYLNPRMGNKENVNLYDPNKKRDGRR
GRKKKKGVYAYKQNNLYYKSLQSRENNNMEEENNDFFFSSSNIKKEDLLACAPCGSLIEV
LKKKKFILDDVNNSSNIANNNNNNKTINMSREAFSWFLKDIRSRIISLVIEYLLIIDDGN
VTNIAKQNSAKHKKKGNSENVISNDGNEALPNSSISNTLINDYNNNDNMNNNNVNGGEWG
TNNEDMNNADGLNMNIKDAQDYITDPNKNSQKSEIYIKETLLFILSLTQCNIGQPIFLEN
LTKAQKEFVDFGIHIGLFLKTHDSYIFITPYALLLTINNLNVENYISILNHLSVEKFCEE
SGYNNNEDENIKKKAKLSEIYFHKYLLIQNTVRVKSEPLMDEDEKKDMKKFETKNYISQD
ITNHNIHSEKRLNENDNLEIGLIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGI
LTRRSVLNAYNSDITADQIIKFLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLTLED
SIVFKNFEKEYLPHLYQQIVIWANSKNYLLHYTPWPKNTNSPEFDAWMKTEKYLCCIYES
KNEIIDKIKEIRGKLMKKRQAI
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggcacggaaaaatattgagaatatggaaatatatgactacatgaaggagatg
gatgcaaagatatgggaatatttatttgatgactcactagcacatgagacgatatttaac
tcactaaatgaattagagcaaattataatatctaggctattgtttattcaacaagtagtt
tcagaaagagctatgagattatggataaatccaaattttttgaaaaaattaagtgagagt
ataaaaaatttagttgatgttaaaatattagttgaaagtgaaacaaaaaaagataactat
aatcaatataaaataaatgatcgattcagattaacattattaaataaaatatatcaaaat
gataaaagtaatatttttatatttaataataatataaaactacaactaaataaagaaaaa
gaattatatgaaaaaaaattatttcctacaaaagaaggtattctatgttatgccagtgca
agatggaatactctcttgcattttattgcatcaccaaatttgaatagttataaatatagt
catagttatagtggtagttatgctagtacttacccacacagtagtagcatccatggtggt
atagattcccctataaaaacagagatgggaacttcgatcgatccaaataatgttcattct
tatggaggggaatattcttataataatagtttgaaaagtgtgaaagtagaaaaaggaaac
tattatggtactcaaactaaaaaaagcagaaaaaataatgaagacagtgatgaagaatat
caaccttatggtgatgaaatgtatgatgatgaaaattatgaaaacgaatcattttcacaa
agaaggaaatataaaagttatggagaatatgaaaacacaggaaatgattcagaatatgac
gaggatgaaggttatgaagatgaatcaaatgagcaatatgacaatcaaacacgaaataaa
tattcacaaaattataatgacattgaaaatagtaatagtggtaaatatttaaacccaaga
atgggtaataaagaaaatgtaaatttatacgatcctaataaaaaaagagatggaagacga
gggagaaagaaaaaaaaaggagtctatgcatataaacaaaataatttatattataaaagt
cttcaaagtagagaaaataataatatggaagaagaaaataatgatttttttttttcttca
tcaaatattaaaaaagaagatttgttagcatgtgcaccatgtggtagtttgatagaagtt
ttgaaaaaaaaaaaatttatacttgatgatgtaaataatagttctaacattgctaataat
aacaataataataaaacaataaatatgagtagagaagcattttcatggtttttaaaagat
ataagaagtagaataatatctttagttattgaatatttattaataattgatgatgggaat
gtaacaaatatagctaagcaaaattcagctaaacataaaaaaaaaggcaattcagaaaat
gtgatttctaatgatgggaatgaagcattaccaaatagttccatctcaaatactcttata
aatgattataacaataatgataatatgaataataataatgtaaatggaggagagtggggt
actaacaatgaagatatgaataatgcagatggtctaaatatgaatataaaggatgcacaa
gattatataacagatccaaataaaaattctcaaaaatcagaaatatatataaaagaaaca
ttattatttattttatcattaacccaatgtaatattggtcaaccaatatttttagaaaac
ttaacaaaagctcaaaaagaatttgtagactttggtatacatataggcttatttttaaaa
acacatgatagttatatatttataacaccatatgcattattattaacaataaataattta
aatgtagaaaattatatatctatattaaatcatttatctgtagaaaaattttgtgaagaa
tctggttataataataatgaagatgaaaatataaaaaaaaaagctaaattaagtgaaata
tattttcataaatatttattaatacaaaatacggttcgtgtgaagagtgagccattaatg
gatgaggatgagaaaaaagatatgaaaaaatttgaaacaaaaaattatatttcacaagac
ataactaatcataatatacattcagaaaaaagattaaatgaaaatgataatttagaaata
gggttaattattcaaagtaattttaaagtttatttatatacttcatcaattttaaaaata
aatattttaagtcatttatgtgaattacaagcaagaacaccaaatatggttgttgggata
ttaacaagaagaagtgtattaaatgcatataactcagatattactgctgatcaaattatt
aaatttttagaatcctattcacatcctggaaaaacaaaattaaaaagtataataccaatt
aatgttattactcagcttaaattatgggaagctgaaagacatcgattaacattagaagat
tctattgtttttaaaaatttcgaaaaagaatatttgccacatttatatcaacaaattgtt
atttgggctaatagcaaaaattatttattacattataccccttggccaaaaaatacaaat
tcccctgaatttgatgcatggatgaaaacagaaaaatatctatgttgcatatatgagtcg
aaaaatgaaattattgataagataaaggaaattcgtggtaagttaatgaaaaagcgtcaa
gcaatatga
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