Polaribacter cellanae: J3359_09090
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Entry
J3359_09090 CDS
T08224
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcea
Polaribacter cellanae
Pathway
pcea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J3359_09090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcea03400
]
J3359_09090 (mfd)
Enzymes [BR:
pcea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J3359_09090 (mfd)
DNA repair and recombination proteins [BR:
pcea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J3359_09090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Nbl1_Borealin_N
UB2H
Motif
Other DBs
NCBI-ProteinID:
QTE24397
UniProt:
A0A975CSC3
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All DBs
Position
2061140..2064484
Genome browser
AA seq
1114 aa
AA seq
DB search
MSKQHIVNQYQKSANVSQIVTALQQEKNHFQISNLVGSSLSFVISETFKKTDKPYLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAI
IVTYPTALFEKVVTKKELEKNTLKVSVGENLSLDFVNEVLFEYKFKRVDFVTEPGDFSVR
GGIIDVFSFSNDEPYRIEFFGDEIDSIRSFDVETQLSKEKMRKVSIMPNVENKTLQESRE
SFLKYIADKTVIFAKNIDLLVGNLDKFYQKAEEAFNDLSKEIKHAKPAELFCDGTFIKNQ
LQDFTLVNFGTSNTYKVSKTLQEINFNTIPQPSFNKKFNLLIANLNEHHKAGFTNYIFCA
NEQQAKRFHDIFDDAEEKVHYQTVVFPLYQGFVDVDTKLVCYTDHQIFERYYKFRLKNGY
AKKQAITLQELNKLEIGDYVTHMDHGIGKFGGLQKIDVQGKKQEAIKLVYGERDILYVSI
HSLHKISKFNGKDGKAPKIYKLGSGAWKKIKQKTKARVKHVAFNLIQLYAKRKLQKGVAF
GPDTHIQHELESSFMYEDTPDQFTATQAVKNDMEKEQPMDRLVCGDVGFGKTEVAVRAAF
KAVDNGKQVAILVPTTILAFQHYKTFTERLKDFPVTIDYLNRFRTAKQKTAVINGVNDGS
VDIIIGTHQLTNKKIKFKDLGLLIIDEEQKFGVAVKDKLKTLKENVDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRHPIESNVIRFSEDVIRDAISYEISRGGQVFFIHNRIENIK
EVAGLLQRLVPSAKIGIGHGQMEGKKLEGLMLGFMNNEFDVLVSTTIIESGLDVPNANTI
FINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHMMTDDARKRIEALVLFSDLGSGI
NIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILQEAIEELKENEFADLYPTDKSKPK
EYVKEVQIDTDFEILFPDDYVNSVTERLALYNKLGTLEKEEALQTFEKEITDRFGEFPTQ
VEDLLDSVRIKWLAKELGLEKIILKQKRMLGYFVSNQQSDFYQTEAFSRILKYVQQNPKS
CVMKEKQTKNGLRLLITFIRIDSIKTGLGILQKI
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagcagcacattgtaaatcaatatcaaaaatctgcaaatgtttcgcagattgtt
acagcacttcaacaagaaaaaaaccattttcaaatttcgaatttggtgggttcttcgttg
tcttttgtgatatccgaaacttttaaaaaaacagacaaaccttatcttttaatttttaat
gataaagaagaagctgcttattatttaaatgatttagaacaacttttaggagataaaaat
gttcttttttacccaggatcttatagaagaccatatcaaatagaagaaaccgataatgcc
aacgttttattacgttccgaagttttaaacaggataaattcaagaaaaaaaccggctata
attgttacctatccaactgccttgttcgaaaaagtagttactaaaaaagagttagaaaaa
aacacactaaaagtttctgttggcgaaaatttatcgctcgattttgtaaacgaagttttg
tttgaatataaatttaaacgtgtagattttgttacagaacctggcgatttttcggttcgt
ggaggaattatagatgtattttctttttcgaacgacgaaccttacagaatcgagtttttt
ggagacgagatagatagcattcgttcttttgatgtagaaacgcaactttctaaagaaaaa
atgaggaaggtttctatcatgccaaatgtagagaataaaactttgcaagaaagccgagaa
agtttcttaaaatacattgcagataaaactgtgatttttgctaaaaatatcgatttatta
gtggggaatttagataaattctatcaaaaagcagaagaagcttttaacgatttatctaaa
gaaataaaacacgcaaaacctgctgaattattttgcgatggaacttttattaaaaatcag
ttgcaagattttactttagttaattttggaacaagtaatacctacaaggtttcaaaaacc
ttgcaggaaattaatttcaatacaattcctcaaccttcatttaataaaaaatttaattta
ttaattgccaatttaaacgaacatcataaagcaggttttaccaattatattttctgcgcc
aacgaacaacaagccaaacgatttcatgatatttttgatgatgctgaagaaaaagtacat
taccaaactgtggtttttccattataccaaggttttgtagatgtagatactaaattagtt
tgctacactgatcatcaaatttttgaacgttattataaatttagattgaaaaatgggtat
gcaaaaaagcaagccataaccctacaagaattaaacaaactagaaattggcgattatgta
acccacatggaccatggaattggaaagtttggcggtttacaaaaaattgatgttcaaggt
aagaagcaagaagccattaaattggtttatggcgaacgtgatattttatatgtaagcatt
cactcgctgcataagatttctaaattcaatggaaaagatggtaaagcacctaaaatatac
aaattaggttctggtgcttggaaaaaaattaaacagaaaaccaaagccagagtaaaacat
gttgcgtttaatttaattcaattatacgcaaaaagaaaactgcaaaaaggggttgctttt
ggaccagatacacacattcagcatgaattggaaagtagttttatgtacgaagatacacct
gaccaatttacagcgacacaagccgtaaaaaacgatatggaaaaagagcaacctatggac
aggttggtttgtggagatgttggttttggaaaaacagaagttgctgtaagagctgctttt
aaagcggttgataatggaaaacaagtcgccattttagttccaactactattttggctttt
caacattataaaacttttacagagcgtttaaaagatttccctgttacgatcgattattta
aacagatttagaactgcaaaacaaaaaactgcagtaattaatggtgtaaatgatggttct
gtagatattattattggaacacaccaactaacaaataaaaaaataaaatttaaagattta
gggcttttaattatagatgaagaacaaaaatttggtgttgctgtaaaagataaattaaaa
accttaaaagaaaatgtagatacattaaccttaactgcgactccaattccaagaactttg
caatttagtttaatggctgccagagatttgtctgttataaaaacaccacctccaaacaga
catccaatagagagtaatgtaattcgtttttcggaagatgtaattcgtgatgccatttcg
tatgaaatttcaagaggagggcaagttttctttattcataacagaatcgaaaatataaaa
gaagtagctggtttgttacaaagactggttccttcagcaaaaataggcattggtcatgga
caaatggaaggcaaaaaactggagggtttaatgctcggttttatgaataatgaatttgat
gttttggtttctaccacaattattgaaagtggtttagatgtgcccaatgcaaacaccatt
tttattaataatgcgaataattttggcttgagtgatttacaccaaatgcgtggtagagtt
ggtcgttcgaacaaaaaagcgttctgttattttataacacctccttatcatatgatgaca
gatgatgccagaaaacgaattgaagccttggttttattttctgatttaggaagcggaatt
aacattgccatgaaagatttagaaattcgtggagctggagatttattaggtggtgaacaa
agtggatttattaatgatattggttttgatacctatcaaaaaatattacaagaagccatt
gaagaattgaaagaaaatgagttcgcagatttatatccaacagataaatctaaaccaaaa
gaatatgtaaaagaagtacaaatagataccgatttcgagattttgtttcctgatgattat
gtaaattcagttacagaaagattggctttatacaacaaattaggaacgttagaaaaagag
gaagcgctacaaacttttgaaaaagaaattacagacaggtttggagagtttccaacgcag
gttgaagatttattagattctgtaagaataaaatggttagctaaagagcttggtttagag
aaaattattttgaagcaaaaaagaatgttggggtattttgtatcgaatcaacaaagcgat
ttttaccaaactgaagctttttctcgcatattaaaatatgtgcagcaaaacccaaaaagt
tgtgtaatgaaagagaaacaaaccaaaaacggattgcgattattaattacatttataaga
attgattctataaaaactggattgggtattttacagaaaatataa
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