Polistes canadensis: 106789870
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Entry
106789870 CDS
T05611
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pcf
Polistes canadensis
Pathway
pcf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106789870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcf03400
]
106789870
Enzymes [BR:
pcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106789870
DNA repair and recombination proteins [BR:
pcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106789870
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
DNA_ligase_IV
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Rep_fac_C
Motif
Other DBs
NCBI-GeneID:
106789870
NCBI-ProteinID:
XP_014609880
LinkDB
All DBs
Position
Unknown
AA seq
898 aa
AA seq
DB search
MSVSLSSRIKFKQLCEVLERIIKACASEKLKILQEFIQQYQKDGAKLKEENPNANISIFP
VLRLLLPECDRERKSYNLKQKLLVNIYIRVLCLGKSSKDAKKLINYRIPTSNKSNGSDLA
EIVYSIVRKQLSPQKESFTIDRINTFLDDISKASEENKNKDELFKELFRQISALELKWLT
RIILKNLKLGIGTQKVLQVYHPEAYEYFCTTSELRKICDNLDRNKKRINFDIEVFSFFKP
MLLERFAIKDAEKLFYNKDEYFVQTKFDGERSQIHMKDGIFKYLTRQGFDITSNWGYGKS
NSDGFLTSILSRRLNQQCKSIILDGEMMGWHKQKKMFGSKGMSYDVKKLTAKSSFQPCFV
AYDIILYNDNLLINRPYKERLNILKDAFQDEEGSLIKCQNTIISNSKDLLDIFNKSLVNK
EEGIVIKKSDSVYKPNIRNGTGCYKLKAEYSENLIQDIDLIILGGYYGEGGLIKSFMMGV
AEVSEKEGEEPKQFFSVVSVSNGITMKELKEFHKKFEKHWIKDRPNCIIGPRIEPPDLWI
RPEHSLILTLRATEITKSDDYSIGYTLRFPRIVKIREDKPWYSACTITEFLSLIKNAGVI
HKLTKRQATMNDIETTTEPVIKPKKMPKSTVSVFEEDLYKDKQLNKNLVPITRLLDGKEI
CVINGNDEISKEEIIEQLLLHRAKVVQNPTKETYCVIVGNDKKAKASNVIKTNKYDVVTL
DWYKRITKEENWGALESFLPWDFLSIRDTTKQLIMEKYDEYYDSYTMDADEESLQRSLKK
MEPMIKEEEFTFTEEQELYKELDKELFDNGISPFSVFKQIIGYFKQCSDSTKFKFRFMGG
LIKEDINEHINYIFIEDKSLISQVNDIMNESMKVIDSKWIDECFQDQKLYSIDKYIIK
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtatcgttatcatcaagaattaaatttaaacaattgtgtgaagtcttggaaaga
attattaaagcttgtgcctccgaaaagcttaaaattctacaagaatttattcaacaatat
cagaaggatggtgctaaattgaaagaagaaaatccaaatgcgaatatttcaatatttccc
gtattaagattgctcttaccagaatgcgaccgtgaacgtaaatcatataatttgaagcag
aaattattggtgaatatttacattcgtgtactttgtctaggaaagtcgagtaaagatgct
aagaaattgataaattacagaatacctacttcaaataaatctaacggaagtgatctagct
gaaatagtttattcgattgtgcgaaaacaattgtcaccccaaaaggaatcatttacaata
gatagaataaatacatttttagatgatatatcaaaagcgagcgaagaaaataaaaataaa
gatgaattattcaaagaattgtttagacagataagcgcgttagaattaaaatggttgact
cgtattattttaaaaaatttaaagttgggcattggaacacaaaaagtgttgcaagtttat
catccggaagcatatgaatatttttgtacaacttctgaactacgaaaaatttgtgataat
ctcgatcgaaataaaaagagaattaattttgatattgaagttttctcttttttcaaaccc
atgttgttggaaagatttgccattaaggatgcagaaaaacttttttacaataaagatgag
tacttcgtacaaacgaaatttgatggagaacgttctcaaatacatatgaaagatggtata
tttaaatatttaacgagacagggatttgatatcacaagtaactggggatatggaaaaagt
aattcagatggttttctaactagtatactttcacgtcgtttaaatcaacaatgcaaatct
atcattttggatggcgaaatgatgggctggcataaacaaaagaaaatgtttggatcgaaa
ggtatgagctatgacgttaaaaagcttacagctaaaagttcttttcaaccctgctttgtg
gcctatgatattattctttacaatgacaatctacttattaatcgaccttataaagaaaga
ttgaatatattaaaagatgcatttcaagatgaagaaggttcattaattaaatgccaaaat
acgatcatttctaacagcaaagatctattggatatttttaataaaagtcttgtcaataag
gaagaaggaattgttatcaaaaaatctgattccgtttacaaaccaaatattcgcaatgga
actggttgttacaaattaaaagccgagtattcagaaaatctaatacaagatattgatttg
attatacttggaggctattatggcgaaggtggtttgataaaaagttttatgatgggtgtt
gccgaagtatctgaaaaagaaggggaagaacctaaacaatttttttctgtcgtgtcagtg
agcaatggtatcacaatgaaagaattgaaagaatttcataagaaattcgaaaagcattgg
attaaagaccgtcctaattgtataattggtcctaggatagagcccccagatttatggatt
cgacctgagcactcgttgattttaacacttagagcaacagaaataacaaaaagtgatgat
tattcaatcggttatactttacgttttcctcgtatcgtaaaaattagagaagataagcct
tggtacagcgcttgcacgatcacagaatttttatcgttgataaagaatgcaggagtaatt
cataaattgactaaaagacaagcaacgatgaatgacatcgaaactacaacagaacctgtt
attaaacctaagaaaatgcctaaatcaactgtgtcggtgttcgaagaagatttatataag
gacaaacaattgaacaaaaatcttgtaccgataacacgtctgttagacggaaaagaaatt
tgtgttattaacggtaatgatgaaatatccaaagaagaaataatagaacaacttttactg
catagggcaaaagttgtgcaaaatccaacaaaagaaacttattgcgtcattgttggaaat
gataaaaaagcaaaagcaagtaatgtaataaagacgaacaaatatgatgtggttacgtta
gattggtacaaacgtattaccaaagaagaaaattggggtgcactggagagttttttacca
tgggattttctttctattcgtgacacgacaaaacaattaataatggaaaaatatgacgaa
tattatgatagttatacaatggacgccgacgaagaaagtttacaacgttctttaaaaaaa
atggaacctatgataaaggaagaagaattcacttttaccgaagaacaagaattgtataaa
gaattggataaagaattgtttgacaatggaatatctccgttttctgtcttcaaacaaata
attggatattttaaacaatgttccgattctacgaagtttaaatttcgttttatggggggt
ctaataaaagaagatataaacgaacatattaattatattttcatcgaagataaatcatta
atttctcaagttaatgatattatgaatgaatcaatgaaagtaattgatagtaaatggata
gatgaatgttttcaagatcaaaaattatattccatagataaatatattattaaataa
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