Pseudomonas corrugata: AXG94_02520
Help
Entry
AXG94_02520 CDS
T04842
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcg
Pseudomonas corrugata
Pathway
pcg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AXG94_02520 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcg03400
]
AXG94_02520 (ligD)
Enzymes [BR:
pcg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AXG94_02520 (ligD)
DNA repair and recombination proteins [BR:
pcg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AXG94_02520 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Rotamase_2
Motif
Other DBs
NCBI-ProteinID:
AOE60694
LinkDB
All DBs
Position
complement(615888..618485)
Genome browser
AA seq
865 aa
AA seq
DB search
MTSKNLDEYNRMRDFAATPEPAAKRTRKSKKTAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKSKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGMWIPQGDP
HEAYEKGRLKFELQGEKLAGLWNLVRTHMPGKQEQWFLIKHQDDAARPESEYDVVQAEPE
SVLSDRTIAPKRRGKAAAAKAVKQPDKAAKPKSSKKIAKTTLSGAVAVPIPETLKPELAT
LVESAPDGEWLYEIKFDGYRVMARIENGDVRLITRNGHDWTHKLPSQAEALAGLGLESAW
LDGEMVVVNEQGVPDFQALQNAFDAGSSGKIAYYLFDLPYLNGMDLRKVPVEQRRAALAA
VLEGSESPLLRFSDAFEETPEALLNSACRMQMEGLIGKRAGSAYVSRRSSDWIKLKCKNR
QEFVVVGFSDPKGARSAFGALLLGLHDADSGELCYAGKVGTGFNETTLKNIHQQLLPLET
KQAAVVNPPTGYEAKGVHWLKPTLLAEVAYAEMTKEGSVRHAVFHGLRSDKPAREITQER
PKTLDKPAQAGKKPVKSATKTKGTQIPAMDGKVRITHPDRVIDATSGTTKLQLAEYYAGV
AEFILPELYERPVALVRAPDGIAGELFFQKNPERLAIPGITSLDKALTGQPVMIINNAEA
LIGAVQMSTVELHTWNATTVDLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVLDELGLK
AFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAVSGPKNRVGRIFI
DYLRNGLGATTICAYAVRTREGLPVSVPIFRDEVAELKGANLWNVHNVHERLAEVGHEPW
ADLKKTRQSITADMRRRIGMKKTDK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcaagaaccttgatgaatacaaccgtatgcgtgatttcgccgccaccccggag
ccggcggcgaagcgcacgcgcaaatcgaagaaaaccgcccacgccttgcagttctgcatt
cagaaacacgatgcttcacgcctgcattacgacttccgcctggaactggacggcgcactg
aagagctgggcggtgcccaagggaccgagcctggaccccaagtccaagcgccttgccgtg
catgtcgaagatcacccattggattacgcaacattcgagggcagcattccggaaggtcat
tatggcgccggcgatgtcattgtctgggatcggggcatgtggattccccagggcgatccc
catgaggcctacgagaaaggccggctcaagttcgagctgcaaggcgagaagctggccggc
ctgtggaatctggtgcgtacgcacatgccgggcaagcaggaacagtggttcctgatcaaa
caccaggacgacgccgctcgtcctgagagtgaatacgacgtagtgcaggccgagccggag
agcgtgctcagcgatcgcaccatcgcacccaagcgccggggtaaagccgctgctgccaaa
gcggtgaagcagccggacaaagccgccaagcccaagtcatcgaaaaaaatcgcgaaaacc
accctcagcggcgcggtggccgtgccgattcccgagacactcaagccggagctggcgacc
ctggtggaaagcgcccccgacggcgaatggctctatgaaatcaaattcgacggctatcgg
gtcatggcccgtatcgagaacggtgacgttcgcctgattacccgcaacggccacgactgg
acccacaagttgcccagccaggccgaggccctggccgggctcgggcttgagtcggcctgg
ctcgacggagaaatggtggtggtcaacgaacagggcgtaccggatttccaggccctgcaa
aacgccttcgacgccggcagcagcggcaagatcgcttattacctgttcgacctgccttat
ctcaatggcatggacttgcgcaaagtaccggtagagcaacgccgggctgcattggcggca
gtgctggaaggcagtgagagtccgttgttgcgtttctccgatgccttcgaggaaaccccc
gaagcgttgctcaacagcgcttgccggatgcaaatggaagggctgatcggcaagcgcgcg
ggcagtgcctatgtgtcccggcgcagcagcgactggatcaagctcaaatgcaagaatcgc
caggagttcgtggtggtcggtttcagcgaccccaaaggcgcgcgcagtgctttcggtgca
ttgctgctggggttgcatgacgccgacagcggcgagctgtgctacgccggcaaggtcggc
accgggttcaacgagaccaccctcaagaacatccaccagcagttgctgcccctggagacg
aagcaagctgccgtggtgaatccgcccaccggctacgaagccaagggcgtgcactggctc
aagccgacgttgctggccgaagtggcgtatgccgagatgaccaaggaaggttcggtgcgc
cacgcggtgttccatggtttacgcagtgataaaccagccagggaaattactcaggagcgt
ccgaaaacgctggacaagcctgcacaagccggcaaaaaaccggtcaaatccgcgacgaaa
accaagggcactcaaatcccggcgatggatggcaaggtgcggatcacccatcctgaccgg
gtcatcgacgccaccagcggtaccaccaagctgcaactggccgaatattacgccggcgtt
gccgagttcattctgccggaactgtacgagcgtccggtagcactggttcgggcgccggac
gggatcgccggcgagctgtttttccagaagaatcccgagcgcctggcgatccccgggatt
accagcctggacaaggcactgaccgggcagccggtgatgatcatcaacaacgccgaagcc
ctcatcggtgcggtgcagatgagtacggtggagttgcacacctggaatgccaccaccgtg
gatctggacaagccggatcgcttcgtcctcgacctcgacccggacccggcgttgccttgg
aagagcatggtcgaagcgacccagctgaccttgtcggtgctcgatgaactgggcctcaag
gcattcctcaagaccagtggcggcaagggcatccatgtggtggtgccgctgacgcgcaaa
ctcggctgggacgaggtcaaggggttcagccacgccattgtcagccatatggcaaagctg
ctgccggatcgtttctctgcggtgtccgggccgaagaatcgggtagggcggatcttcatc
gactacctgcgcaatggcttgggcgccaccaccatctgcgcctacgccgtccggacccga
gaggggctgccggtgtcggtgcccatctttcgggatgaggtggcggagctcaagggggcg
aatctgtggaatgtacacaacgttcatgagcgtcttgcggaagtggggcacgagccttgg
gccgacctgaagaaaacccgccagagcatcacggccgatatgcgccggcgaatcggcatg
aagaaaacggataaatga
DBGET
integrated database retrieval system