Pseudomonas corrugata: AXG94_24770
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Entry
AXG94_24770 CDS
T04842
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcg
Pseudomonas corrugata
Pathway
pcg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AXG94_24770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcg03400
]
AXG94_24770
Enzymes [BR:
pcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXG94_24770
DNA repair and recombination proteins [BR:
pcg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AXG94_24770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOE64850
LinkDB
All DBs
Position
complement(5663610..5667059)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPATAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELGF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
RFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSVRLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGVGRERFPAKALPDL
AIEAKATQPLAALAGFLDEFPGRVLFTAESAGRREVLLELLDRLKLRPKSVESWPDFVAS
KDRLAITIAPLDEGLVLDDPAVALVXESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIASATNEEDLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLQAEQLGIKKV
DGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVEAL
FERLTQTTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtcttccgcttctccctgccacggcaggtaaacagcactggggcaat
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgctgcaaagcgcttc
accctgctgctgaccgccgacagccagagcgccgagcggctggagcaggagctgggtttc
tttgccccggatctgccggttctgcattttccggactgggaaaccctgccctacgatctg
ttctcaccgcaccaggacatcatttcccagcgaatcgccagcctctatcggttgccggag
ctcagtcatggcgttttggtagtgccgatcaccactgccctacatcgcctggcgccgacc
cggttcctgctcggcagcagcctggtgctggatatcggccagaagctggatgtggagcag
atgcgcacccgcctggaggccagcggctatcgttgcgtcgacaccgtgtacgagcacggc
gagttcgcggtacgtggcgcattgatcgacctgttcccgatgggcagcaagctgccttat
cgcatcgacctgttcgatgacgaaatcgaaaccctgcgtaccttcgatccggaaaaccag
cgttccatcgacaaggttcagtcggtccgcctgttgcccgccaaggaattcccgctgcag
aaggacgcggtaacccgcttcaaggcgcggtttcgcgaacgctttgacgtggatttccgg
cgctgcccgatcttccaggacctgagcagcgggatcacccctgccggcatcgagtattac
ctgccgctgttcttcgaagagacctccaccctgttcgattacctgccccaggacacccag
gtgttctcgttgccaggcatcgaacaggctgcggaaaacttctggaacgacgtgcgtaat
cgctacgaagagcgtcgcgtcgacccctcccggcctttattgccacccgccgagttgttc
ctgccggtagaggactgcttcgcccgtctcaagaactggccgcgcgtggtggcgagccag
caggacgtggagaccggcgtcggccgtgaacgcttccccgccaaggccctgccggacctg
gcgatcgaagccaaggccacgcagccgttggcggcgctggcaggttttctcgacgagttt
cccggccgcgtgctgtttaccgccgaatccgccgggcgacgcgaagtactactggaattg
ctcgatcggctgaagttgcgaccaaaatcggtcgagagctggccggatttcgtcgcaagc
aaggatcgactggcaatcaccatcgcaccgctggacgagggcctggtcctcgacgatccg
gcggtggcgctggtggncgaaagcccgttgttcggccagcgcgtcatgcaacgccgacgt
cgtgagaaacgcgccgatgccgccaacgacgccgtcatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtacacatcgaccacggcgtgggccgctacctgggcctggcgaca
ctggagatcgacaaccaggcggcggagttcctcacactggaatatgccgaaggcgccaaa
ctctacgtgcccgtggcgaacctgcacctgatcgcacgctataccggcagcgacgatgcc
ctggccccgctgcatcgcctgggctcggaaacctggcagaaggccaagcgcaaggccgcc
gagcaggtgcgcgacgtggccgccgaactgctggacatctacgcccgccgcgccgcacgc
gaagggtatgccttcgccgacccgaaagccgactacgaaaccttcagcgccggtttcccg
ttcgaggaaaccgtcgaccagcagaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaagccaatggaccggctggtatgcggcgatgtcggtttcggcaagaccgaagtggcg
atgcgcgccgcgttcattgccgtgcacagcggcaagcaggtcgcgattctggtgccgacc
accctgctcgcccaacagcactacaacagcttccgcgaccgcttcgccgattggccggtc
accgtggaagtgatgagccgcttcaagtccgccaaggaagtgaacgccgccgtggccgac
ctggccgagggcaagatcgacatcgtcatcggcacgcacaagctgctgcaggacgatgtg
aagatcaagaacctcgggctggtgatcatcgacgaagaacaccgcttcggtgttcgccag
aaagaacaactcaaggccctgcgcagcgaggtcgacatcctgaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcattgccaca
ccgccggcccgtcgcctgtcggtgcgcaccttcgtcatggaacagaacaagagcacggtc
aaggaagccttgttgcgtgagctgctgcgcggcggccaggtctattacctgcacaacgac
gtcaagaccatcgagaaatgcgccgccgacctggctgagctggtaccggaggcgcggatc
ggcattggccacggacagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgaacgggccgacaagttcggcctggcccagttgcaccag
ttgcgcggccgggtcgggcgcagtcaccaccaggcctacgcctaccttttgacgccaccg
cgccagcagatcacccccgacgcggaaaaacgcctggaggccatcgccaatacccaggac
ctgggggccggtttcgtgctcgccaccaacgacctggaaatccgcggtgccggcgaactg
ctgggcgacggccagagcggccagatccaggccgtcggcttcaccctgtacatggaaatg
ctcgaacgggcggtcaagtcgatccgcaagggtgagcagccgaatctcgaccagcccctg
gggggcgggccggaaatcaacctgcgggtgccggcgctgatcccggaggattacctgccg
gatgtccatgcacggctgatcctctacaagcgtattgcctcggccaccaacgaggaggac
ctcaaggatttgcaggtggagatgatcgaccgcttcggcctgctgccggaaccgaccaag
aacctggtgcgaaccacgctgctcaagctccaggccgaacagctgggcatcaagaaggtc
gacggtggccccaacggtggccggatcgagttcgaagcccagacgccggtcgatccgctg
gtactgatcaaactgatccagggccagccaaagcgctacaaattcgaaggcgccacgatg
ttcaaattcatggtgcccatggagcgcccggaagaacgtttcaacaccgtagaagcgctg
ttcgagcgccttacccagaccactgcttga
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