Pseudomonas chlororaphis PA23: EY04_14070
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Entry
EY04_14070 CDS
T03201
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pch
Pseudomonas chlororaphis PA23
Pathway
pch03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EY04_14070 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pch03400
]
EY04_14070 (ligD)
Enzymes [BR:
pch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EY04_14070 (ligD)
DNA repair and recombination proteins [BR:
pch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EY04_14070 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIC19991
LinkDB
All DBs
Position
complement(3124616..3127150)
Genome browser
AA seq
844 aa
AA seq
DB search
MARSLSEYQRKRDFAITSEPAADKPFGQSAKTASALRFVIQKHAARNLHYDFRLELGGSL
KSWAVPKGPSLDPRQKRLAVHVEDHPLSYGNFEGSIPTGQYGAGDVIVWDHGIWQPHDDP
DASYRAGKLKFTLIGEKLGGDWTLVRTHMRGSGDKEQWLLIKEQDAQARPSDEYDVVQAL
PRSVLSGATVGDNKRAKPQAAKKTAKKPPGKKVVALPQSLAPQLATLVDKAPSGDWRYEI
KFDGYRILARIQDDEVRLLTRNGHDWTSRLPQQAKALAALKLKDSWLDGEMVVLNDQGLP
DFQALQNAFDIGRSVDIIYYLFDAPFLQGEDLRETPVEQRRQALKQALGRKSSKVLRFSE
AFAAHHQDILESACALSLEGVIGKRAGSPYVSRRSADWIKLKCRLRQEFVVVGYTKPQGS
RSGFGALLLGVNDASGLVYAGRVGTGFDQKTLKQLHERMQELERDSSPLAKPLTAAQARG
VHWIEPQLVAEAEFAEWTREQVVRQAAFIALRSDKPASEIVRERPQTFKAVETRSRHTAS
HSDKSAAHSVAGVRITHPERVIDQQSGTTKLQLAQFYASIDQQILPHLRDRPVSLLRAPE
GVEGEQFFQKHAEHLAIPNIRHLDPALDPGHARLMEIDSTSALIGAVQMGTIELHTWGAT
HDQIETPDLFVLDLDPDPALPWKSMLEATQLTLSVLDELGLQAFLKTSGGKGMHLIVPLA
RRADWETVKGFAKAVAQFMAQQLPERITATMGPKNRVGRIFVDYLRNTRGASTVAAYSVR
ARPGLPVSVPIARDELGDVRHAQQWNVANLGQRLEELRRDPWHGFAHRQRITAKMWQQLG
ADRP
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggccagatccttgagtgaataccagcgcaaacgcgacttcgcgatcacctcggagccg
gcggcggacaaacccttcggccaatccgccaagaccgcctcggccctgcgtttcgtgatc
cagaagcacgctgcgcgcaacctgcactacgactttcgcctggaactgggcggcagcctg
aaaagctgggcggtgcccaagggcccgagcctggaccccaggcaaaaacgcctggcggtg
catgtcgaggaccacccgctgagctatggcaatttcgaaggcagcatccccaccgggcaa
tacggcgccggcgacgtgatcgtctgggaccatggcatctggcaaccccatgacgacccc
gacgccagctaccgggccggcaagctcaagttcaccctgatcggcgagaagctcggcggc
gactggaccctggtgcgcacccatatgcgcggcagcggcgacaaggaacagtggctgctg
atcaaggagcaggatgcccaggcacgaccgagcgacgagtacgacgtggtccaggccctg
cccaggagcgtgctcagcggtgccacggtgggcgacaacaagcgcgccaaaccccaggcc
gcgaaaaaaaccgcgaagaaaccgccaggaaaaaaggtcgtcgccctgccgcaaagcctg
gcgccgcagctggcaaccctggtggacaaggcgcccagcggcgactggcgctacgagatc
aagttcgacggctaccggatcctcgcgcggatccaggacgacgaagtgcgcctgctgacc
cgcaacggtcacgactggaccagccgcctgccccagcaagccaaggccctggccgccctg
aagctcaaggacagctggctggacggcgaaatggtggtgctcaacgaccaaggcctgccg
gacttccaggcattgcagaacgccttcgatatcggtcgcagcgtagacatcatctattac
ctgttcgatgcgccctttctgcagggcgaggacttgcgcgaaacgccggtggaacaacgc
cgtcaggcgctcaagcaggcgctcgggcgcaaatcgagcaaggtcctgcgcttttccgaa
gcctttgccgcccaccaccaggacatcctcgaaagcgcctgcgccctgtccctcgagggg
gtgatcggcaagcgggccggcagcccctatgtgtcgcgccgcagcgccgactggatcaag
ctcaaatgccggctgcgccaggagttcgtggtggtcggctataccaagccgcaaggttcg
cgcagcggctttggcgccctgctgctgggggtcaacgacgcaagcgggctggtgtacgcc
ggccgggtcggcaccggtttcgaccagaagaccttgaagcagctgcatgagcggatgcag
gaacttgaacgggattcatcgccactggccaagcccctgaccgcggcccaggcccgcggc
gtgcactggatcgaaccgcaactggtggccgaagccgagttcgccgagtggacccgcgaa
caggtggtgcgccaggcagccttcatcgccctgcgcagcgataagccggccagcgaaatc
gtccgtgagcggccacagaccttcaaggccgtcgagacccgcagtcggcatacggcctcc
cattcggataaatcggccgcccacagcgtcgccggggtcagaatcacccacccggaacgg
gtcatcgaccagcagtccggcaccaccaagctgcaactggcgcagttctacgccagcatc
gaccagcagatcctgccgcacctgcgcgaccggccggtgtcgctgctgcgggcgcctgaa
ggagtggaaggcgagcagtttttccagaaacatgccgagcacctggccatccccaatatc
cgtcacctcgacccggcgctggaccccggccacgcgcgactgatggaaatcgacagtacg
tcggcgctgatcggcgcggtgcagatgggcaccatcgagctgcacacctggggcgcgact
cacgatcagatcgaaaccccggacctgttcgtgctcgacctcgacccggacccggccctg
ccctggaaaagcatgctggaagccacccaactgaccctgtcggtgctcgatgagctgggc
ttgcaggccttcctgaaaaccagcggcggcaaaggcatgcacctgatcgtgccgctggcg
cgcagggccgactgggaaacggtcaagggcttcgccaaggccgtcgcgcagttcatggcg
cagcagttgccggaacgcatcaccgcgaccatgggcccgaaaaaccgggtcggcaggatc
ttcgtcgattacctgcgcaacacccgcggcgccagcaccgtggccgcctattcggtacgc
gcccgcccgggactgccggtctcggtgcctatcgcccgggatgagctgggcgatgtccgg
catgcccagcagtggaatgtggcgaaccttgggcagcgtctggaggagttacggagggat
ccgtggcacggcttcgcccatcggcagcggatcaccgcgaagatgtggcagcagttgggg
gcggaccggccttga
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