Paenibacillus chitinolyticus: PC41400_04855
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Entry
PC41400_04855 CDS
T06610
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pchi
Paenibacillus chitinolyticus
Pathway
pchi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pchi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PC41400_04855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchi03400
]
PC41400_04855
Enzymes [BR:
pchi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PC41400_04855
DNA repair and recombination proteins [BR:
pchi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PC41400_04855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QAV17047
UniProt:
A0A410WRW6
LinkDB
All DBs
Position
complement(1079472..1080365)
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AA seq
297 aa
AA seq
DB search
MPTGYKKTQGTIMVEGQELTITNPGKPLWPEAGITKLDFLQKLIELSPYLLRYCRDRHLT
TIRFPHGIHDKSFYQKNTPEPVPDFVNLAPLDGIRYVNLDSLPTLIWLGNLACLEFHPSF
HRIGETLPAEWLIDIDPSLEVEPRIMEAAHLIGEVLDSLRIQSVPKTSGATGIQIYVPIQ
HGYTFEQLRKIGYFIGSFVVKKYPKLFTIERLKKNRGDLIYFDYLQHWYGKTLSAPYTPR
AKIHGTVSTPLLWEEVERRCDPRDFTLHVIVERIKKMGDLIEKVPPQNLDAVLSHLE
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgcccacagggtacaaaaaaacgcaaggcacgatcatggtcgaagggcaggagctgacc
attaccaaccccgggaagcctctctggcctgaggcgggaattacgaagcttgatttcctc
caaaagctgattgagctgtccccttatttgctgcgctactgcagagaccggcatttgacg
acgatccgtttccctcacggcattcacgacaaatcgttttaccagaaaaatacccccgag
cccgttccggatttcgtgaatcttgctccgctggacggcatccggtatgtgaatctggat
tcgcttccgacgctgatctggctcggcaacctggcctgcctggaatttcatccctcgttc
caccgcatcggggagacactgccggccgagtggctcatagatatcgaccccagcctggaa
gtcgaaccgcggatcatggaagcggctcacctgatcggagaggtgctggattcgcttcgt
atccagtccgtgcccaaaacgtccggagcgaccggcatacaaatttacgtgcccatccaa
cacggatacaccttcgagcagcttcgcaaaatcggctatttcatcggctccttcgtcgtc
aaaaaatatccgaagctatttacgatcgagcgcctgaaaaagaatcgcggcgatctcatt
tacttcgattacctgcagcactggtacggcaaaacgctctccgctccctatacgccgcgg
gccaaaatccacggaaccgtctccaccccgctgctttgggaggaagtcgagcggcgttgt
gatccgagagattttaccctacacgtcatcgtggagcggatcaagaagatgggcgatctg
atcgagaaggtgcctccccagaaccttgatgccgttttgtctcacttggagtag
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