Pochonia chlamydosporia: VFPPC_00565
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Entry
VFPPC_00565 CDS
T09407
Name
(RefSeq) pre-mRNA-processing ATP-dependent RNA helicase PRP5
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VFPPC_00565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pchm03041
]
VFPPC_00565
Enzymes [BR:
pchm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VFPPC_00565
Spliceosome [BR:
pchm03041
]
Complex A
U2 snRNP components
U2 related factors
VFPPC_00565
Complex B
VFPPC_00565
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
28844553
NCBI-ProteinID:
XP_018148728
UniProt:
A0A179G466
LinkDB
All DBs
Position
1:complement(2268338..2272111)
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AA seq
1257 aa
AA seq
DB search
MARPRDSRSPSPAGSQISSRRHRKDDDRRDRDRRDDGRDYRRRSRSRSPDVRRRDDHGST
GLYSDLILNKQNRYRDRGGRDRDRDRDRDSYRRRERSVDRRDDDHYRGGTRDHRDRERRR
SRDRYNDRPRSPARRRNRSRDDDRDHRRRPDSRDGGRGRREGTADSHPRSSRADSRNRKT
PLTDSGKAGSDQTKKTKAAAPPSDADKKAERLAKLEAWKKKKESESQKQKEVNPSQTRSL
LAEMDMKALGHSPSAGSPGVSSVASPATLNDSGSASPAVPYAGKFDPKTIAKKSAASRTH
DTSKSVLGSLDVQQEKMAAPVKQKTIGECRQHSTVANGLNPVVNIDCLKASALPANRVKT
SAFGFGKSQADADKLPTKRKLDLDEEDTTKRTLTKLPALPMETDDTPYADQDEDDDSDGD
NFAENEEEAAAAARAAHERRLQTENQTEPQPGEPMEEDSKEDRMQVDQETNGVPESNGVD
VAPAAEPKPEPQPEPAPEAAPEQSMDVDEEEDVDPLDAFMADLKQTETKKPVKSTLAAKK
AQEPEAYFSDDEYNFDAERKGDGDILAIANKRKKKDIPTVDYSKIDLVPVRKNFWVEPAE
LSALTEEELADLRLELDGIKVNGKDVPKPVQKWAQCGLTRQTLDVIDNLGYEKPTTIQMQ
AIPTLMSGRDVVGVAKTGSGKTVAFLLPMFRHIMDQPPIKDTDGPVGLIMTPTRELATQI
HRDCKPFLKSMGLRAVCAYGGAPIRDQIAELKRGAEIIVCTPGRMIDLLAANQGRVTNLR
RVTYVVLDEADRMFDMGFEPQVMKIFASMRPDKQTILFSATMPRIIDSLTKKVLKSPVEI
TVGGRSVVAKEIEQIVEVREESTKFFRVLELLGELYDRDEDARALIFVDRQEKADDLLKE
LMIKGYPCMSIHGGKDQVDRDSTISDFKKGVVPLLVATSVAARGLDVKQLKLVINYDAPN
HLEDYVHRAGRTGRAGNTGVAVTFVTPDQENCAPGIAKALEQSEQPVPERLNEMRKAHRE
KVKSGKAKDSSGFGGKGLDRLDQEREAARLRERRTHKAEGEEEEEKEDKEEENKKAEKAL
DAIRAAASGVQARDNAKAAAEGQKGSDTPTGGADKTKDALDKVSSAVSAINSRLGKAGQL
RSGQPIDNKGPDAGAYHATLEINDFPQKARWAVTNRTNVAKILDSTGTSITTKGSFYPAG
KEVPPNADPKLYILIEGDTELAVGSALQEMTRLLREGTIAAADADSRAPASGRYTVS
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggctcggcccagagactcgcgctcaccaagtcctgcaggcagtcaaatcagctcacgt
cgccaccgaaaagatgatgatcggcgggatagggaccgtcgagatgacggcagggactat
cgccgacgctccagatcgcgcagtccagatgtgagaagacgtgatgatcatggatcgact
ggcctgtattctgaccttattctcaacaagcagaaccgataccgcgatcgtggtggccgc
gaccgcgaccgcgaccgtgatcgcgactcataccgccgcagagaacggtctgtagatcga
cgcgatgacgaccattaccgtggaggaacgagagaccaccgcgacagagaaagacgcagg
tcgcgtgaccggtataatgacaggcctcggtcccctgcacgccgacgaaaccgcagccgt
gacgatgacagagatcataggaggcgacctgattcccgtgacggtggtcgcggacgccgt
gagggcaccgccgactctcacccccgcagcagccgcgctgacagccgaaatcgaaagact
cctcttactgacagcggcaaagctgggtccgatcaaactaagaagaccaaggcggcggcg
cctccgtctgatgctgacaagaaggccgagcgactcgcaaaattagaggcctggaagaag
aagaaagagagcgagagtcagaagcagaaagaagtgaatcctagccagactagaagcttg
ctggctgaaatggatatgaaggccctggggcattctccctctgctggctcgcctggtgtt
tcgtcagtcgcatcgccggcgacgctgaatgactctggcagtgcatctcctgctgttcct
tatgctggcaagtttgaccccaagaccattgccaagaaatctgctgcatcgagaacgcat
gatacttccaaatctgtgttgggctcacttgatgtccaacaagaaaagatggctgcgcca
gtcaaacagaaaacaattggtgagtgccgccaacactccactgtggccaatggattaaac
ccggttgttaacattgattgtctaaaagcctctgctttacccgccaacagagtgaaaacg
agtgccttcggtttcggaaagtcccaggcggacgcggacaagctccctacgaagcgcaag
ctcgatctcgacgaagaggataccacgaagcggacgctgacaaagctacctgctctacca
atggaaacggacgataccccttacgctgatcaggatgaggacgacgactcagatggagac
aatttcgctgagaatgaggaagaggctgctgctgcggcacgtgctgcccacgagaggcga
ctgcagacggaaaatcaaactgagccccagccaggtgagcccatggaggaagattccaag
gaagaccgtatgcaagttgatcaagagacaaatggcgttcctgagagcaacggtgttgat
gttgccccagcagctgagccaaagccagagccacagccagagccggcgccggaagcggcg
ccggagcagagcatggatgtggatgaagaagaggacgtggatcctctggatgcgttcatg
gccgacctgaagcagactgaaacaaagaagcccgtcaagtctacccttgctgcgaaaaag
gctcaggaacccgaagcctatttcagcgacgatgagtacaactttgatgcagagcggaaa
ggtgatggcgacatccttgctattgcaaacaaacgtaaaaagaaggatatcccaactgtg
gattatagcaagattgacttggtacctgttcgcaaaaatttctgggtcgagcccgccgag
ttgagtgcccttaccgaggaagagctggctgatttgcgcctggaactcgacggtatcaag
gtcaacggcaaagacgtacccaagccagtccagaaatgggctcagtgcggcctcacgcgg
cagacgttggatgtcattgacaacctgggttacgagaagccgactaccattcagatgcag
gccatccctacgctcatgtctgggcgggatgtcgttggtgtagccaagacgggctctggc
aagaccgtggcgtttctcctccctatgttccgccacatcatggaccagccgccgatcaaa
gacactgatggaccagttggcttgatcatgacgcctactcgtgagttggcgactcagatt
cacagggattgcaagccatttttgaagagcatggggttgcgcgccgtctgtgcgtatggc
ggtgcgccaattcgtgatcagattgccgagttgaagcgtggcgctgagatcatcgtctgc
actcccggtcgaatgattgatttgcttgccgctaatcagggccgggttacgaacctgagg
agagtaacatatgtcgtgctggatgaggctgatcgaatgtttgacatgggcttcgaacct
caggttatgaagatctttgctagcatgcgacctgacaagcaaacgattctgttctctgca
acgatgcctcggatcattgactccctgaccaagaaggttctgaagagccctgttgagatt
acagtgggtggtcggagtgttgtcgccaaggaaattgagcagattgtcgaggtccgtgag
gagagcaccaaattcttccgcgtcttggagcttcttggtgaattgtatgatcgcgatgaa
gacgcccgcgcattaattttcgtcgaccgacaagaaaaggcggacgacctgctcaaggag
ttgatgatcaagggctacccttgcatgtcgattcacggaggcaaggaccaagtggaccgc
gactcgacgatttcagatttcaaaaagggtgttgtgccgctgcttgtggccacatcagta
gctgctcgaggtctcgacgtcaagcagttgaagctagtcatcaactacgatgcacctaac
catctcgaagattatgttcaccgtgcaggtcgaacaggccgtgcagggaatacgggcgtc
gcagtcacgtttgtcacacccgatcaggaaaactgcgctcctggcattgccaaggctcta
gagcagagtgagcagcctgtgcccgagcgtcttaatgagatgagaaaggcacatcgcgaa
aaggtcaagtccggcaaggccaaggactcgtctggctttggtggcaagggtctcgatcgt
ctcgaccaagaacgtgaagccgctcgtctaagagaacgcagaacccataaggccgagggc
gaagaggaagaggagaaagaagacaaggaggaagagaacaagaaggccgaaaaggctctc
gatgccatccgagcagccgcatcaggcgtccaagcgcgagataacgccaaggcggcggca
gagggtcaaaagggcagcgacacaccgaccggcggcgctgacaagaccaaagatgccctc
gacaaggtcagttccgcagtcagcgccatcaacagccgtctcggcaaagccggccaacta
cgttctggtcagcccattgacaataagggtcctgacgccggcgcataccacgccactctc
gaaatcaacgatttcccgcaaaaggcgagatgggccgtcaccaacagaaccaatgtggcc
aagattctggattccacaggaacatccatcacgaccaagggtagtttctaccctgctggc
aaggaggtccctcccaatgcggatcccaagctgtatattctcattgagggtgacacggaa
ctagctgttggttcggcgctccaagaaatgactagattgctgagagagggaaccattgct
gcagctgatgcggatagcagagcaccagctagtggtcgttatacagtcagttaa
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