Pochonia chlamydosporia: VFPPC_14112
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Entry
VFPPC_14112 CDS
T09407
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VFPPC_14112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_14112
Enzymes [BR:
pchm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VFPPC_14112
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
VFPPC_14112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
BRCT
DNA_ligase_A_C
DNA_ligase_IV
mRNA_cap_enzyme
Bac_globin
Motif
Other DBs
NCBI-GeneID:
28855876
NCBI-ProteinID:
XP_018138555
UniProt:
A0A179F5H3
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MSAVKRSKSPDGDAEREEEMQYGSVGLTKEELAEKYPNRPLNHSKTLAFSELFLQLFNPL
NENKKQPAGGPARKKGPHGATTLSPQEQRRHIIERFINRWRKEVGNDFYPALRLILPDKD
RDRGVYGLKENAIGKLLVKLLKIDKNSEDGYNLLHWKLPGQTMAARLAGDFAGRCYEVIS
KRPMRTEVGDMTIAEVNQQLDKLAASTAEAENLTVFETFYNRMNAEEMLWLIRIILKQMK
VGATEKTFLYLWHPDGETLFSVSSSLRRVCWELYDPTLRLEQEEAGISLMQCFQPQLAQF
QMPASFQKMIELLRPTEDDPEFWIEEKLDGERMQMHMVNDPSHPGGKRFCFWSRKAKDYT
YLYGDGVLDGNSSLTRHLKDAFASGVRNLILDGEMITWDMAVDKIVPFGTLKTAAIAEQQ
NKSGSDASGHRPLFRVFDILYLNDKSLTQYTLRDRHNALEKAVKSVHRRLEIHAYTSATT
ADAIEPMLRDVVANASEGLVLKNPRSMYRLNSRNDDWLKVKPEYMSEFGESLDCVVIGGY
YGSGRRGGTLSSFLCGLRVSQNHIQAGKNPEKCYSFFKVGGGFRGEDYAEIRHHTEGKWI
EWDRKNPPTEYIELGGGESKQLERPDVWIRPKDSFVLSAKAASVGPSDSFAMGYTLRFPR
FRRLRLDRSWDSALSVDEFEELKKMVDQEAKEKAMTVEDRKRRNPKRVKRELVIAGEDTT
PAEFEGEKSHVFDGLEFCVLSESLKPYKKTKAQLEAIIKENGGSISQRAVAGTQMVLIAD
KKVVKVASLIKDGTANIIRPKWIRDCVEQGGSFLLPYEEGHLFHATEDLGLIAAENTDMY
GDSYARDISVDELREILQDMPKLEHRFDEEHFLEELEERGKGITDLRGFMFRRCVVHFRQ
VDSVNAAPLGKLAHYVKYGGGRVVDELGEGVTHIVIVGEDAMEVGETADGARKEVSSWKK
VPRVLGDRWVSECWNEKTLLDEEAYMIS
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctgtcaagcggagcaagtcccccgatggcgatgctgagcgtgaggaggagatg
caatatggctcagtcggtttgacaaaagaagagctggcagaaaaataccctaacaggcca
ctgaaccactctaagacgttggccttttctgagcttttcctgcaactcttcaatccactg
aatgagaacaaaaaacaacccgctggaggaccagctcgtaagaaggggccacatggcgca
acaacactctcaccacaggaacagagacgacacataattgagaggtttatcaacagatgg
cggaaagaagttggcaatgacttttatcctgccctgcgtttgatcctccctgacaaagat
cgcgatcgtggcgtctatggactgaaggaaaatgccataggaaagctgcttgttaagctt
ctcaaaattgacaagaactccgaagatggatacaatttgttgcattggaagctccccggc
cagacaatggctgcacgactggccggcgatttcgctggtcgctgctacgaagtcatctcc
aagagaccaatgcggacggaggttggcgacatgactattgcagaggtaaatcagcagctg
gataagttggccgcgtcgaccgcggaagcagagaatttgacggtgtttgagacgttttat
aaccgcatgaatgcagaggaaatgctctggctcattcgcatcattctgaagcaaatgaaa
gttggtgctacggagaagacttttctctatttgtggcaccctgacggcgagactcttttc
agcgtgtcatcgagtttgaggcgtgtatgctgggaattgtacgacccgacgcttagactg
gaacaggaagaagctggaatatcgctgatgcagtgctttcaaccgcaactagcacagttc
caaatgcctgcgtcgtttcaaaagatgattgagttacttcggccaacagaggatgacccg
gagttttggatcgaggaaaagctggatggagaacgaatgcagatgcacatggtgaatgac
ccttctcatcccggcggaaagcgtttctgcttttggtcacgaaaggcaaaggattacacg
tatttatatggagacggagttcttgacggcaattctagcctgacacgccatctcaaagat
gcattcgcttcgggagttcgcaacctcattttggacggagaaatgatcacctgggacatg
gcagtcgacaaaatcgtcccctttggaacgttgaaaactgccgcgattgcagaacaacaa
aacaaatctggttcagacgcatctggccaccggcccttgttccgtgtctttgacatattg
tatctcaacgataagtctctcacgcaatacaccctccgtgaccgccacaatgccctcgaa
aaggcagtcaagtcagtccaccgacgccttgaaatccacgcatatacaagtgccacaacg
gcagatgccattgaacctatgctccgagatgtcgtggccaatgcctcggagggccttgtc
ctcaaaaatccccgctcaatgtacaggctcaacagtcgaaacgacgactggctcaaagtc
aagcctgaatacatgtctgagttcggcgagtcgctagactgcgtcgtcatcggcggatac
tacggctccggtagaaggggtggcacgctgtccagttttctttgcgggctacgtgtttcg
cagaatcacatacaagctggcaagaaccccgaaaaatgctacagtttcttcaaagtaggg
ggcgggtttcgaggtgaagactacgctgaaattcggcatcacaccgagggcaagtggata
gagtgggataggaagaatccgccaacagagtacattgagcttggtggcggtgaaagcaag
caattagaacgaccggatgtgtggattcgcccaaaagattcgtttgttctttctgcaaag
gcggcaagtgtcggaccatctgatagttttgcgatgggatacacgctgcgattcccgcga
ttccggcggctgcgactcgaccgcagctgggactccgctctctcagtcgacgagtttgaa
gagctcaagaaaatggtagaccaggaagcaaaagaaaaagccatgacggtagaggacaga
aagcgcagaaatcccaagcgcgtgaagcgagagctcgtgattgctggcgaggacacgaca
cccgccgagtttgaaggagaaaagtctcacgtctttgacggtctcgagttttgcgtcctt
tccgagtcactgaagccgtataagaagaccaaggcgcagcttgaagcaatcattaaagaa
aacggtggctcaatttctcagcgagctgttgcgggtacgcaaatggttctcattgccgat
aaaaaggtggttaaagtggcgagtctaatcaaggatggcaccgcgaacatcattcgaccg
aagtggataagagactgtgtcgaacagggcggttcgtttttacttccatatgaagagggt
catttgtttcacgccacggaggatttgggccttattgcagctgagaataccgacatgtat
ggcgacagctatgccagggatatctctgtggatgagctacgtgagatactgcaggatatg
ccaaagctagagcatcgatttgacgaagaacacttccttgaggaattggaagagagaggg
aagggaattacagatttgcgcggcttcatgtttagaagatgcgttgtacatttccggcaa
gtagacagcgtcaatgccgcaccgttggggaagctggcacattatgtaaagtatggtggt
gggcgagtagtggatgagcttggagagggtgtgacgcatattgttattgttggagaagat
gcaatggaggtgggagagacagcggacggagcgaggaaagaggttagctcctggaagaaa
gttccgcgtgttttgggcgataggtgggtttccgagtgttggaatgagaagaccttgttg
gacgaggaggcatatatgatttcatga
DBGET
integrated database retrieval system
