Penaeus chinensis (fleshy prawn): 125031273
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Entry
125031273 CDS
T08118
Name
(RefSeq) uncharacterized protein LOC125031273
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125031273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchn03021
]
125031273
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125031273
Transcription machinery [BR:
pchn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125031273
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125031273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFIA_Pcf11
DNA_pol3_a_NI
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
125031273
NCBI-ProteinID:
XP_047477893
LinkDB
All DBs
Position
12:28271210..28286566
Genome browser
AA seq
1135 aa
AA seq
DB search
MGIAGNIGDGRRKLYEEDEDSPGSPGRGEAARQNYQVIVKQAEEQMRRGEINLSQYNQLL
TTVVTLVEQDKIREAQYRDRRHHRTPSHFPDDGDWTGPSEGPLSGPTSAPPTSGSGPRQG
PGPGPVLGSGSGSGPGSGPSSGPSSGPGSGPGPGPGPGPGLGPGPGPGPGPSPSPGHGRG
MRENHMRGGRGGYMGPNGPPSRGGLGGMGRGLPSGRGGPPGGPDGEDGWGRGGMRGRGRR
GRGGFIQDDRNWGYREGNLEDEWTGEADLPFVTEERLKAVARDSETRTIDIDKVPREIRT
YGNTAVILLDRDDPRILTFGEGHCNIVFDEGQFVLPMRIGEDYKEFTIAGETHRVKLGVP
TKELMLDNRGYQCFFGGKPITVHLAGQPRTVRLDGKPPNVNIGPVKNTDFVVGKIQLVIH
ARKVVPLYLDAKPQRFNIDGRPFIIKFVDSLRAVTINDVRFPVEFGGLPISISVRGYRRF
LRFTALPAGIIPGQVNIHGMESEGQKLSGVSGSPAQDQFSGEERNMPVMKGPNRRSPPVG
IPRKPPPNYPEKTKVAPHSTLGPDGIFLPQGPPPTQRPIQGAPPQGPPPQGPPPVQPPQL
GPTSGVLPLSNVNNQPTPQAIASLTDILSHPPPQVGIPPNAVPGSYMTTQLPPAPNKASQ
PVPKTALDLNSLLENLTRTGLISTKVQDKSKAKKEEEQKREEEEEEKEKEEYERIPVEFM
FNSENLRKRRKWLIEVIYRGMQCSSCGLRYPPEQTLQYSHHLDWHFRQNRRQQESTKKAN
TRKFYFSIQDWLQYEEIEDVEERVPSMFENEGVVETMESEEAEEPSVAVSSDSALGVCPT
CHDTFSQFFHQETEEWRYHNAIQVDGINYHPACHQDTIRAEAAEREAEERLKEMERTEEE
DKMEEEAGDKEASSDDAEKSEKTNNDVSKDSEPPTADKLPGMSLLSDLPIRIKEEPLDVE
EYDVESDNQLSFPVALNIKQEVKREPEDEDEEDLIDKEPEEDDESSLLRNESTDEPMWDT
PTVSVNAAETDIASSIDGNTELSTPQANPAGGLVTKIKFNVSKPTLNINNNINNENKKDD
ANETLNSSTNDEADEFVPPPFTVDYDLKPAFRHVELEEQPMEARGIEISGLCSIM
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgggtatagcaggcaatataggagatggtcgccgaaagttgtatgaagaggatgaagat
agtccaggatcaccaggaagaggagaagctgcaagacagaattatcaggtaatagtgaaa
caagcagaagagcaaatgcgtcgaggtgagatcaatctcagtcaatacaaccagttgcta
accactgttgtcactttggtggagcaagacaaaattcgtgaagcacagtacagagacagg
cgacatcacagaacaccttcacatttcccagatgatggagattggacaggaccaagtgag
ggtccattgtcaggtcctacatctgcacctcccacctcaggttcagggccacgtcaaggg
ccagggccagggccagtactaggctcaggctcaggctcaggtccaggttcaggaccaagt
tcaggaccaagttcaggaccaggttcagggccagggccagggcctggaccaggcccaggt
ttggggccaggtccaggtccaggtccaggtccaagtccaagtccaggacatggaagggga
atgcgggaaaatcatatgagaggtggtcgaggaggttacatgggtcccaatggacctcca
tcaagaggtggccttgggggtatgggacgaggccttccaagtggacggggtggacctcct
ggagggccagatggggaagatggatggggcagaggaggcatgcgaggacgaggaagaaga
gggagaggaggattcattcaggatgaccgtaattggggttacagggaaggaaaccttgaa
gatgaatggacaggcgaagcagatcttccatttgtcacagaagagcggctaaaggctgta
gctagggattcagagacaagaacaattgatatcgacaaggtcccaagggaaattagaaca
tatggtaacacagctgtcatcctcttggacagggatgatccccggattctcacatttggg
gaaggtcactgtaacatcgtatttgatgagggccagtttgtactacccatgagaataggg
gaagactataaagagtttacaattgctggagagacacaccgtgtcaaactaggtgtccca
acaaaagaactaatgttagataatagaggatatcagtgtttctttggtggaaaaccaata
actgtacatcttgcagggcagccaagaacagtgagattagatgggaaacctcccaatgtc
aatataggacctgttaagaatacagattttgttgttgggaagattcaactagtaatccat
gctaggaaagttgttcccctttacttggacgctaagccacagcgctttaatatagacggc
aggccattcatcattaaatttgtggattctctaagagcagtcacaattaatgatgtcagg
ttcccagtcgagtttggaggtttgccaatcagcatcagtgtacgtggctatagacgcttt
ctacggttcactgctctacctgctggaattataccaggacaagtaaatatacatggaatg
gaaagtgaaggacagaaattgtcaggtgtttctggcagcccagctcaagatcagttttca
ggggaagagagaaacatgccagtcatgaaaggtcccaacagaaggtcaccccctgttggg
attcccaggaaacctcctccaaattatccagaaaaaacaaaggtggccccacattcaact
cttggacctgacggaattttcctgcctcagggaccacctccaacacagagaccaatacag
ggagcccccccacaaggccctccaccacaaggtccccctcctgtgcaacctccacagctt
ggtcccacttctggagtgttaccattatctaatgtaaacaaccaaccaaccccacaagcc
attgcctcacttactgatattctcagtcatccgccaccacaggttggtattcctccaaat
gcagttccaggttcatacatgacaacacagcttcctccagcccctaataaggcctctcaa
ccagttcctaaaacggcacttgatctaaattctctgctggaaaacctcactcgcactggc
ctaatatcaacaaaagtacaagacaaatccaaagcaaagaaagaagaagaacagaagaga
gaagaggaggaagaggagaaagaaaaggaagagtatgaacgaattccagttgaattcatg
ttcaactcagaaaatcttcgaaagaggcgaaagtggcttattgaagtgatctatcgggga
atgcagtgttcatcttgtggccttcgttacccaccagagcaaacactacagtattcccat
cacttggactggcatttccgtcaaaacagacgccagcaagagtccacgaaaaaggcaaac
accagaaagttttacttctctattcaggactggctgcagtatgaggaaattgaagatgtc
gaggaaagagtaccaagtatgtttgaaaacgaaggagtggttgaaaccatggaatctgag
gaagcagaggagccaagtgtggctgtgtcatctgattcagcccttggtgtttgtcctacc
tgccatgacactttctctcagttcttccaccaggaaactgaagagtggagataccacaat
gctattcaagtagatggcattaattatcatcctgcttgtcaccaagataccatcagggct
gaggcagcagagcgtgaagcagaagaaagattgaaggaaatggaaaggacagaggaagaa
gataagatggaggaagaagcaggcgacaaggaagcaagttctgatgatgcagaaaagtcg
gaaaagaccaacaatgatgtttcaaaggattctgagccaccaacagcagacaagttgcca
gggatgtcattactgtcagatctgcccatcaggatcaaagaagagccgctggatgttgag
gagtatgatgttgaaagtgataatcagctgtctttcccggtggccttgaatatcaaacaa
gaggtgaagagagaacctgaagatgaagatgaggaagatctgattgataaggaacccgag
gaagacgacgaatccagcttgttgcgcaatgagagcactgatgagcctatgtgggatacg
cctacagtatctgtcaatgctgcagagacggatattgccagttccattgatgggaataca
gagctttcaactccacaagccaatccagctggtggcctcgtgacaaaaatcaagttcaat
gtgtcaaagccaacccttaatatcaacaataacataaataatgaaaataaaaaggatgat
gcaaatgaaactctcaactcaagcaccaatgatgaagcagatgaatttgtgcctcctcca
ttcactgttgactatgatctcaagccagcttttaggcatgttgagctagaagagcagcca
atggaagctcgaggtattgagatatcaggattatgctcaattatgtaa
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integrated database retrieval system
