Penaeus chinensis (fleshy prawn): 125031867
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Entry
125031867 CDS
T08118
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125031867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchn03400
]
125031867
Enzymes [BR:
pchn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125031867
DNA repair and recombination proteins [BR:
pchn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125031867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
BRCT
BRCT_2
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
125031867
NCBI-ProteinID:
XP_047478816
LinkDB
All DBs
Position
2:26905611..26922236
Genome browser
AA seq
772 aa
AA seq
DB search
MSDSKPIAAIIPWSQVCRMLDKVQAAVKAAKKEMLVKFIVQFRDLLKKKLEKDPQSTDSF
FPVLRILLPALDRARGAYGVKERKLAELYIRILGLKKEGNDAQKLLHYRKPKSEGGGETG
DFAEVAYYVLRSRCDDKGNMTLLDVDTHLTSIAENYAAKKHEEVERSLLMMLRKMTATEQ
KWLIRVLLKDMKLGIGQGTIFNAWHPDAKDYFDVNNSLEKVCKTLQDPTVRLHEIEVSLF
SAFRPMLAERAVLEKVEAQMDHKTYFAETKYDGERSQIHKNRNAYKYFSRNGFEFTNNFG
SDPNSGLFTPYLHGQFLPHVKDIILDGEMVGWSKKHGAIVSKGEHLDVKNLKEDGDLQVC
LVLFDIIYLNGQVLTNLPLSERLEKLKTVLMPLEGRIQFSAKVEVTTKEDVIRILNDAID
NREEGIVLKNPDSIYSPASRKGGWIKVKPEYVDSLVSELDLLIIGAYYGSGRRKGVLSHF
LLGVAVPSNEVGGKPTEFHSFCRVGSGYTYAELGDLVAKLSPHARKGQAPPGVFVAREKP
DLWINPAKSCIVQVRAAEVVKSEMYKTGVTLRFPRVEKVRYDKPWYDTLTTKELDSLVKE
ACGKLATKHLLEVGDEPSPKRKALPKVEQISLPMHFRPADLSRVVKKDELFSGLEMCVMS
GDEDYTKQQLEKMVVEHGGSLTQHPGGNTHCIITDTRSVRVNNYIATSSYNVIRPSWVIT
CTTKCCLVPWGPLDAIHVMEKEKTRMQELFDKFGDSYYEPTDEKTLKELWRT
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattctaaacccattgcggcgatcataccctggtcgcaagtatgtcgcatgctg
gacaaagtacaggcggctgtcaaggctgccaagaaggaaatgttggtcaagttcatcgtg
cagtttcgtgaccttctcaaaaagaaactggaaaaggatccccagtctacggacagtttt
tttcctgtgcttcgcattctgctaccagctcttgacagagcccgaggagcctatggtgtc
aaggaacgtaaacttgcagaactttatattcgcatccttggcttgaagaaagagggcaat
gatgcacagaagcttctgcattataggaagcccaaatcagaaggaggtggagagacggga
gatttcgcagaggtggcatactatgttctgaggagtcgctgtgatgacaagggcaacatg
actctcttggatgtcgacacacatctgacttccattgctgaaaattatgcagcaaagaag
catgaggaagttgaaagatctcttctcatgatgctaaggaaaatgacagcaacagaacaa
aaatggcttattcgcgttctcctgaaggacatgaaactaggcattggccagggtacaatc
ttcaatgcctggcacccagatgctaaagactattttgatgtgaataacagcttggaaaaa
gtatgcaaaactctgcaagatcccactgttcgtctccatgagatcgaggtgtccctcttt
tctgccttccgtcccatgctggctgaacgtgcagtgctggagaaagtggaggcacagatg
gaccataagacttactttgctgaaaccaaatatgatggggaacggtcacagattcacaag
aatagaaatgcctacaagtacttttcacgaaatggctttgaattcaccaacaattttggc
agtgacccaaacagtggcctttttacaccttaccttcatggccaattccttccccatgtg
aaagacatcatccttgacggagagatggtgggatggagcaagaaacatggtgctattgtt
agcaaaggagaacatttggatgtcaagaatctaaaagaggatggggacttgcaggtctgc
cttgtcctctttgacatcatttatctgaacggccaggtgttgactaatctgcccctgtca
gagaggcttgaaaagttgaagactgtgctcatgccactagagggaaggatccagttctct
gccaaggtggaggtcacgacaaaggaagatgtcatcagaatcttgaatgatgccattgac
aatcgagaagaaggaattgtgctgaagaatccagattccatttacagccctgcttctcgg
aaaggaggttggatcaaagtcaagccggagtatgtggactccttggtctcagaactggac
ctactgatcattggagcgtattatggatcgggaaggcgcaaaggggtcctctctcatttt
ctgctgggtgttgctgtccccagtaatgaagttggaggaaaacccacagaattccactcc
ttctgccgtgtcgggtcaggttacacctatgctgagcttggtgacctcgtggccaagttg
tctccccatgccaggaaagggcaagctccccctggggtatttgtggccagggagaaacca
gatctgtggattaatcctgcaaagtcatgcattgtgcaggttagagctgctgaggtagta
aaaagtgaaatgtacaaaactggagtgactttgagattccctcgtgtggagaaggtccgt
tatgacaagccatggtacgatacacttacaacaaaagaattggattcacttgtgaaggaa
gcatgtggtaagctggccacaaagcaccttctggaagtaggtgatgaaccctcacccaag
cgtaaagcattgccaaaggtggaacagatatcccttcccatgcacttccgtccagctgac
ttgtcacgggttgtcaaaaaagatgaattgttcagtgggctggagatgtgcgtaatgagt
ggtgatgaagactacaccaaacaacagctggagaagatggtggtagagcatggtggttcc
ttgactcagcacccaggagggaacacacattgtatcatcacagacacaaggtctgttcgt
gtcaacaattacatagcaacctcctcttacaatgttattcggccatcatgggtcattacc
tgtactaccaagtgttgcctggtgccatggggtcccttagatgccatacatgtcatggaa
aaagaaaaaacacgcatgcaggaattgtttgacaaatttggtgacagctattatgagccc
acagatgagaagacactgaaagagttatggagaacatga
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