Penaeus chinensis (fleshy prawn): 125043368
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Entry
125043368 CDS
T08118
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03022
Basal transcription factors
pchn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125043368
09124 Replication and repair
03420 Nucleotide excision repair
125043368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchn03021
]
125043368
03400 DNA repair and recombination proteins [BR:
pchn03400
]
125043368
Transcription machinery [BR:
pchn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125043368
DNA repair and recombination proteins [BR:
pchn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125043368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
125043368
NCBI-ProteinID:
XP_047495415
LinkDB
All DBs
Position
33:complement(15386100..15398716)
Genome browser
AA seq
394 aa
AA seq
DB search
MNDDDDPKEYRWQSGYEKTWEAIQEDDSGRLEPSVTDMIRRAKRRKLLDREASVRLGIMR
HVFIILDLSQAMAEQDLKPTRQICTLKILDEFIREFHDQNPISQLGIIATQNKVAKRHSE
LSNNPQRHLDCIKRLHELPCRGEPSMQNSLEYALSALRHLPPHTSREILIIYAALTTCDP
GEIETTIQKVKDSNIRVSVVGISAELHVCKMISKDTGGSFSVSINDLHLKELIFEHLEPP
PASVKMDHTLIKVGFPHQVNTDARPALCMCHLDDLPPLNTRGYYCPQCTAKYCDLPAECR
VCGLMLVTAPHLARSYRHLFPLKHFEEVPIEEDQSFHCYGCLKQLTVAASDKNVYICRIC
KQVFCFECDIFLHETVHSCPGCASNPTISQYSTS
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgacgatgatcctaaggaatatcggtggcagagtggttacgagaagacatgg
gaggcaatacaggaagacgactcggggcgactcgagccttcggtcacagacatgatccgg
cgagcaaagcgtcggaagctgctggatcgagaggcgagtgttcggctggggattatgcga
catgttttcatcatactggatctctctcaggcgatggcagaacaagacttgaagccaaca
cgtcagatctgcacacttaagatattagatgaatttatcagagagttccacgatcaaaat
ccaattagccaattgggtattattgcaacgcagaataaagtggctaagagacatagcgaa
ttgagcaataaccctcaaagacacttagattgtatcaagcgtcttcatgagcttccatgt
cgcggagagccatcgatgcagaattccttagaatatgccctatcagccttaaggcatctt
ccaccacacacatctcgggaaattcttataatttacgctgccctgactacgtgtgaccct
ggagaaatagagaccaccatacagaaagtcaaagattccaacatacgtgtttcagtagtt
ggcatttctgcagagctacacgtctgtaaaatgataagcaaggacacaggtgggtccttc
tccgtctccatcaatgatctccacctgaaggagttgatttttgagcaccttgaacctcct
ccagcatctgtcaagatggaccacactctgatcaaggtcggcttcccccatcaagttaat
actgatgccaggcctgcactctgtatgtgtcaccttgatgatctacctccactgaacacg
cgtggatactactgtccacagtgcactgccaagtattgtgatcttcctgccgagtgccgt
gtttgtgggctcatgttggtaacagctccccacttggcacgatcttacagacacttattc
ccgctgaagcattttgaagaggtacccattgaggaggatcagagcttccactgctatggc
tgcctgaagcagttaactgtggcagcatctgataaaaatgtttacatctgccggatatgt
aagcaagtgttttgcttcgaatgtgatattttcctccacgagacggtccactcctgccct
ggttgtgcttcaaacccaacaatatctcagtacagcacaagctag
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