Pseudomonas chlororaphis subsp. piscium: C4K32_3016
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Entry
C4K32_3016 CDS
T09060
Name
(GenBank) ATP-dependent DNA ligase, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C4K32_3016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_3016
Enzymes [BR:
pchp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C4K32_3016
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C4K32_3016
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AZC69678
LinkDB
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Position
complement(3244909..3247434)
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AA seq
841 aa
AA seq
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MAKSLSEYQRKRNFAITSEPATDKPSVKSTSALRFVIQKHAARNLHYDFRLELGGSLKSW
AVPKGPSLDPTQKRLAVHVEDHPLSYGDFEGSIPAGQYGAGDVIVWDHGVWQPHGDPEAS
YRAGKLKFTLIGEKLGGDWALVRTHMRGSGDKEQWLLIKEQDAQARPSAEYDVVQALPRS
VLSGATLGDNKRAKPQVAKKNAKKPPGKKAVALPQSLAPQLATLVDKAPSGDWRYEIKFD
GYRILARIQDDEVRLLTRNGHDWTSRLPLQAKALAALKLKGSWLDGEVVVLNDQGLPDFQ
ALQNAFDIGRSLDIIYYLFDAPFLQGEDLRETPVEERRQALKEALGRKSSKVLRFSEAFA
AHHQDILESACALSLEGVIGKRAGSPYVSRRSADWIKLKCRLRQEFVVLGYTKPQGSRSG
FGALLLGVNDADGLLYAGRVGTGFDQQTLKQLHERMQELERDSSPLSKPFTAAQTRGVHW
IEPQLVAEVEFAEWTREQVVRQAAFIALRSDKPAREIVREQPQTSKAVETRSRHTAAHSD
KSAAHSVAGVRITHPERIIDQQSGTTKLQLAQFYASIAEQILSHLRGRPVSLLRAPEGVE
GEQFFQKHAEHLAIPHIRHLDPALDPGHARLMEIDSTSALIGAVQMGTIELHTWGATHDR
IETPDLFVLDLDPDPALPWKSMLEATQLTLSVLDELGLQAFLKTSGGKGMHLIVPLARKD
DWDRVKGFAKAIAQFMAQQLPERITATMGPKNRVGKIFVDYLRNTRGASTVVAYSVRARP
GLPVSVPIARDELGDVRHAQQWNVANLGQRLKELRRDPWHGYAHRQRITAKMWQQLGVEK
P
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatccttgagtgaataccagcgcaagcgcaacttcgcgatcacctcggagccg
gcgacggacaaaccctccgtcaagtccacctccgccctgcgtttcgtgatccagaagcac
gctgcgcgcaacctgcactacgactttcgcctggaactgggcggcagcctgaaaagttgg
gcggtgcccaagggcccgagcctggaccccacacaaaaacgcctggcggtgcatgtcgag
gaccacccactgagttatggcgatttcgaaggcagcatccctgccgggcaatacggcgcc
ggcgacgtgatcgtctgggaccatggcgtctggcaaccccatggcgaccccgaggccagc
taccgggccggcaagctcaagttcaccctgatcggcgaaaagctcggcggcgactgggcc
ctggtgcgcacccatatgcgcggcagcggcgacaaggaacagtggctgctgatcaaggag
caggatgcccaggcgcggccgagcgccgagtacgacgtggtccaggccctgcccaggagc
gtgctcagcggtgccacgctgggcgacaacaagcgcgccaaaccccaggtcgcgaaaaaa
aacgcgaagaaaccgccagggaaaaaggccgtcgccctgccgcaaagcctggcaccgcaa
ctggcgaccctggtggacaaggcgcccagcggcgactggcgctacgagatcaagttcgac
ggctaccggatcctggcgcggatccaggacgacgaagtgcgcctgctgacccgcaacggt
cacgactggaccagccgcctgcccctgcaagccaaggccctggccgccctgaagctcaag
ggcagctggctggacggcgaagtggtggtgctcaatgatcaaggcctgccggacttccag
gcgctgcagaacgccttcgatatcggccgcagcctggacatcatctattacctgttcgac
gcgccctttctgcagggcgaagacttgcgcgaaacgcccgtggaagaacggcgtcaggcc
ctcaaggaggcgctcgggcgcaagtcgagcaaggtcctgcgcttttccgaagcctttgcc
gcccatcaccaagacatcctcgaaagcgcctgtgccctgtccctcgagggggtgatcggc
aagcgggccggcagcccctatgtgtcgcgccgtagcgccgactggatcaagctcaaatgt
cggctgcgtcaggagttcgtggtgctcggctataccaagccgcaaggttcgcgcagcggt
tttggcgccctgctgctgggggtcaacgacgctgacgggctgctgtatgccggccgggtc
ggcaccggcttcgaccagcagaccttgaagcagctgcatgagcggatgcaggaacttgaa
cgggattcatcgcccctatccaagcctttcaccgcggcccagacccgtggcgtgcactgg
atcgaaccgcaactggtggctgaagtcgagttcgccgagtggacccgcgagcaggtggtg
cgccaagcggccttcatcgccctgcgcagcgataagccggccagggaaatcgtccgcgaa
cagccgcagacctccaaggccgtcgaaacccgcagccggcatacggccgcccattcggat
aaatcggccgcccacagcgtcgccggggtcaggatcacccacccggaacggatcatcgac
cagcagtccggcaccaccaagctgcaactggcgcagttctacgccagcatcgccgagcag
atcctgtctcacctgcgcggccggccggtgtcgttgctgcgggcgcctgaaggggtggaa
ggcgaacagtttttccagaaacatgccgagcacctggccatcccccatatccgccacctg
gatccggcgctggaccccggccatgcacggctgatggaaatcgacagcacttcggcgctg
atcggcgcggtgcagatgggcaccatcgagctgcacacctggggcgccacccacgaccgg
atcgaaaccccggacctgttcgtgctcgacctcgacccggacccggccctgccctggaaa
agcatgctggaagccacccaactgaccctttcggtgctcgatgagctgggcttgcaggcc
ttcctgaaaaccagcggcggcaaaggcatgcacctgatcgtgccgttggcgcgcaaggac
gactgggacagggtcaagggcttcgccaaggccatcgcgcagttcatggcgcagcagttg
ccggaacgcatcaccgcgaccatgggcccgaaaaaccgggtcggcaagatcttcgtcgat
tacctgcgcaacacccgcggcgccagtaccgtggtggcctactcggtgcgggcgcgcccg
gggctgccggtctcggtacctattgcgcgggatgaactgggcgatgtccggcatgcccag
cagtggaatgtggcgaaccttgggcagcgcctgaaggagttacggagggatccgtggcac
ggctacgcccatcggcagcggatcaccgcgaagatgtggcagcagttgggagtggaaaag
ccttga
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