Pseudomonas chlororaphis subsp. piscium: C4K32_3821
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Entry
C4K32_3821 CDS
T09060
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C4K32_3821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchp03021
]
C4K32_3821
Transcription machinery [BR:
pchp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C4K32_3821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
Terminase_5
HTH_24
HTH_AsnC-type
Rv2175c_wHTH
GerE
HTH_11
TIP39
HTH_31
MarR_2
TnsD
Motif
Other DBs
NCBI-ProteinID:
AZC70480
LinkDB
All DBs
Position
complement(4242838..4243350)
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AA seq
170 aa
AA seq
DB search
MGANRNPHYSLIGQMFKRDYQWLCASVGRVLGCHHSAQDIASETFVRVLALPDPAAIREP
RALLTTIARRLVYEGWRRQDLERAYLESLALAPTPVHPSPEERALVIEALLAVDRLLNGL
SAKAKAAFLYHQLDGLTYAEIGQQLGVSTSRVQQYMAEAFKRCYQAMVDA
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgaatcggaaccctcattactcactgatcgggcagatgttcaaacgcgactat
cagtggctgtgcgcctcggtgggacgcgtcctgggctgccatcacagcgcccaggacatc
gcctcggaaaccttcgtgcgggtgctggccctgccggaccccgcggccatccgcgagccc
cgggcgctgctgaccaccatcgcccggcgcctggtctacgaaggctggcggcgccaggac
ctggagcgcgcctacctggaaagcctggccctggcgccgacgccggtgcacccgtcaccc
gaggagcgggcgctggtgatcgaagcgctgctggccgtggatcgcttgctcaacggcctg
tccgccaaggccaaggcggcctttctctaccatcagctcgacggcctgacctacgccgaa
atcggccagcagttgggggtgtccaccagtcgcgtccagcagtacatggccgaggcgttc
aagcggtgttatcaggcgatggtcgacgcatga
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integrated database retrieval system
