Psychrobacter cibarius: Q6344_04290
Help
Entry
Q6344_04290 CDS
T09259
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcia
Psychrobacter cibarius
Pathway
pcia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q6344_04290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcia03400
]
Q6344_04290 (mfd)
Enzymes [BR:
pcia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q6344_04290 (mfd)
DNA repair and recombination proteins [BR:
pcia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q6344_04290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
ERCC3_RAD25_C
UB2H
RecG_dom3_C
CbiX
Motif
Other DBs
NCBI-ProteinID:
WLG14560
LinkDB
All DBs
Position
1017382..1021137
Genome browser
AA seq
1251 aa
AA seq
DB search
MPITALTDAFEPINQQLFPIQNAERRWLAPVHGAVSSLWLASLVQTPLWNVADRLKVVVT
RDQNQLNQIETELAFCGVDAYVFPDWETLTYDELSPHQDIVSERINLLTDMPTSGVLLIS
IQALMHRVAPPSWLIGQHFDLSVGDRFDINTQRVLLAKAGYRAVENVFEPGEFAVRGSII
DIFAMGQPFPLRLDLFDDEIETIRFFNPQTQRTLTVDDLKTMMSGNDSSMGKESLSLLHK
LPDISKPIEQFQILPAKEFPLDEGRETFRTNFATMFPNASSRKFELHKDVMAGIASSGLE
YYQPLFFDLKEWTAESSLFAYLPSDALFITDELINEKQVDYWSQIQRRYEERRHDIDKPI
VAPEWLYLLSNTLNAHLNRYPRVILSARNELASMTDVAAIDSDDSLLEDASLLQVEHQSD
LQPQLPLTANKQQGLVTLSAQEPPQLTVNHQKAEPLTQLLEFLELQAQTATPVLIVAETA
GRREILIELFKGKIDIKAYDSFAAFLTADKTNSVKGNKLPQVGLTVAPIERGVYVPERLV
LISETQLFGRQVLQTRRRRQSGVSEEFLVKSVTEITEGSPVVHIEHGIGRYNGLITLDVG
DGEQEFIHLKYADDASIYVPVANLQMINRYSGGDPALAPLHKIGSGKWDKAKQKALEQIH
DVAAELLNMQARREAKVGIHFKIDASQYELFASQFAFEETPDQANAIHAVMEDMRQNQPM
DRLICGDVGFGKTEVAMRAAFIAVSAGYQVAVLVPTTLLAGQHEDNFRDRFADWPVRIET
LSRFGGKKHQETVLIDLAAGKVDIVIGTHKLLQPDVKFSNLGLMIVDEEHRFGVRHKERI
KAIQTDVDSMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIKTFVMQKTDALMKEAI
LRELLRGGQVYLLHNDVASIERMAETIRELVPEARVGVAHGQMQERQLEQVMQQFYHKKF
NVLICSTIIETGIDVPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYCYLLVPSIKGL
KGDAKRRLHAIERANTLGAGFMLASEDLEIRGAGEILGKQQSGNMQAIGFSLYMDMLERA
TKAIKAGKEPDLSTPLSLTSEINLHSSALIPEEYLHDVHQRLLFYKRISNADDKETLIDI
RTEMIDRFGTLPEQTKQLFAIHGLRIQAEPLKINKIDANSNSMTLEFAPDTPVDALAIIK
LIQSNGQRYRMNGASGIRYQDADKLATPQQRVTAIQELLCYFSEHTVAESA
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcactgctttgactgacgcgtttgaaccaattaaccagcagttgtttcctatc
cagaatgccgagcggcgttggctggcacctgtgcatggtgcagtcagcagtttgtggcta
gcaagtctggtgcaaacaccgctatggaatgttgccgaccgattaaaagttgtggtgacg
cgtgaccaaaaccagctcaatcaaatagagacggaattggcattttgcggcgtcgatgct
tatgtgttccccgattgggagacgttgacctatgatgagctgtcaccgcatcaagatatt
gttagtgagcgtatcaatctattaaccgatatgccaacgtcaggcgtgctgctcatctcg
attcaggcattgatgcatcgtgtcgcaccgccaagctggctgatagggcagcattttgat
ttgagtgttggtgatcgatttgatataaatacccagcgcgtattgctggcaaaggcaggc
taccgcgcggttgagaatgtgtttgagccgggggaattcgcggtacgtggcagcatcatt
gatatctttgccatgggtcagccgttcccactacgtttagatttgtttgatgatgagatt
gagaccattcgtttttttaatccgcaaacccagcggacactgaccgttgatgacctcaaa
acaatgatgagcggcaacgatagtagcatgggcaaagagtcactatcactgctacacaag
ctgccagatatctcaaaacctatcgaacaattccaaatactacccgccaaagaatttccg
cttgatgaagggcgtgagacgtttcgtaccaacttcgccacgatgttccctaatgcgagc
agccgtaagtttgagctacataaagacgtaatggcaggtatcgctagtagcggacttgaa
tattatcagccgctattttttgatttaaaagagtggacagcagagagtagcttgtttgct
tacttaccaagcgatgcgctttttatcactgatgaactgattaatgaaaaacaggtagat
tactggtcacaaattcagcgccgttatgaagagcgccgtcatgatatcgataaacctatt
gtcgcccctgaatggttatatttgctatcaaataccttaaacgcgcatcttaatcgttat
ccacgggtgattctcagtgcgcgcaatgagctggctagcatgacggatgttgctgcgatt
gacagcgatgattcgttattggaagatgcttcattgttacaagttgaacaccaatcagat
ttacagccacaattgccactgacggcaaataagcagcaaggcttggtgacgctcagtgcg
caagagccgccacaattgaccgttaaccaccaaaaggctgagcctcttacccagctatta
gaatttttagagctgcaagcacaaacagcgacgccagtattgatcgttgctgaaacagcg
ggtcgccgcgaaattctcatcgagttgtttaaaggcaagattgacattaaggcttatgac
agctttgcagcgtttctaacagcggacaaaaccaacagcgttaaaggtaataagctgccg
caggttggtttaaccgttgcgcccattgagcgtggggtatatgttcctgagcgtttagtg
ctgattagtgagacgcagttatttggtcggcaagtgctgcaaacacgccgtcgtcgtcaa
agcggggtgtccgaagagtttttggttaagagtgtcaccgagataaccgaaggcagccca
gtggtgcatatcgagcatggtattgggcgttacaatgggctgattacgttagatgtgggt
gatggtgagcaagagtttattcacttaaaatatgccgatgatgccagtatttatgtgccc
gttgctaatttgcaaatgattaaccgttatagtggcggtgacccagcacttgcgccattg
cacaaaatcggtagcggcaaatgggataaagccaagcaaaaagcgctcgagcaaattcac
gatgtagcggctgagctgcttaatatgcaggcgcgtcgtgaagctaaagtcggtattcat
tttaaaatagatgcgtcacagtatgagctctttgccagtcaatttgcctttgaagaaacg
ccggatcaagccaatgccattcatgcggtgatggaagacatgcgacaaaaccaaccaatg
gatcggctcatctgcggtgatgtgggttttggtaaaacagaagtggctatgcgggcagca
ttcattgctgtcagcgccggttatcaggtagcggtgctagtgccgacgaccttgctggcc
ggtcagcatgaagacaatttccgcgaccgttttgctgattggccagtgcgtatcgagacg
ctctcacgctttggcggcaaaaagcatcaagaaacggtgttgatagatttagcagcaggt
aaagtcgatattgtcatcggcacccataaactgttacaacctgatgtgaaattctctaat
ttaggtttgatgattgtcgacgaagaacatcgcttcggggtgcgccataaagagcgtatc
aaggcgattcagactgatgtggatagtatgtcgatgacagcgacaccgatccctagaacg
ctcaatatggcgctctcaggtatgcgtgacatgtcaattatcgcgacacctccagcacga
cgtttggcgattaaaacctttgtcatgcaaaaaactgatgctttaatgaaagaggccatc
ttgcgtgagctattgcgcggtgggcaggtttatttattacataatgatgtggcgagcatt
gagcgtatggcagaaaccatacgtgaattggtgcctgaagcgcgagtaggggttgctcat
gggcaaatgcaagagcgccaacttgagcaagtgatgcagcagttttatcataaaaaattc
aacgttctgatatgctctaccattatcgaaaccggtattgatgtgcccaatgccaatact
atcatcattgagcgcgccgataagtttggcttggcacaattacatcagctgcgtggtcgt
gtcggtcgtagtcatcatcaagcgtattgttatttacttgtgccttctatcaaaggtcta
aaaggcgatgctaagcgccgattgcatgcgattgaacgtgccaataccttaggtgcaggt
tttatgctggctagcgaagacttagaaattcgcggtgctggcgaaatacttggtaagcag
caaagtggtaatatgcaggcgattggttttagcttatatatggacatgctggagcgagcg
acaaaagccattaaagcgggtaaagagcctgatttaagcacaccgttgtcgctgactagt
gagattaatctgcatagctcagcattgataccagaagaatatctccatgatgtccatcag
cgtttgttattttataagcgtatcagtaatgccgatgataaagagacattgattgatatt
cgtaccgaaatgattgaccgttttggtacattaccagagcaaactaagcagttgttcgcc
atccacggactgcgtatacaagctgagccgctgaagattaataagattgatgccaatagt
aatagcatgacattagagtttgcgcctgataccccagtcgatgccttggcgattattaag
ttgattcaatcaaatggtcagcgctatcgtatgaacggtgcttctggtattcgttatcaa
gatgctgataaactggcaacgccgcagcagcgcgtcaccgcgattcaagaattattatgc
tattttagcgagcatacggtggcagagtcagcgtag
DBGET
integrated database retrieval system
