Proteus terrae subsp. cibarius: F9282_18095
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Entry
F9282_18095 CDS
T06330
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcib
Proteus terrae subsp. cibarius
Pathway
pcib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F9282_18095 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcib03021
]
F9282_18095 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcib03400
]
F9282_18095 (rpoC)
Enzymes [BR:
pcib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F9282_18095 (rpoC)
Transcription machinery [BR:
pcib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F9282_18095 (rpoC)
DNA repair and recombination proteins [BR:
pcib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F9282_18095 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QGW04774
LinkDB
All DBs
Position
complement(3845398..3849624)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERGQILTEEQYLDALEEFGDEFDAKM
GAEAVQNLLQSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFMQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDCINAKGEGMVLSGPKEAERVYRAG
LASLHARVKVRITEEIKDGEGNITTETSLKDTTIGRAILWMIVPKGLPYALVNQPLGKKA
ISKMLNTCYRVMGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTTEGVMMTPVIEGGDVKEPLRERVL
GRVAAEDILKPGTADILVPRNTLLNEKLCDLLEENSVDSVKVRSVVTCNTDFGVCAKCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGTLKL
FNAKFITNTAGKLVITSRNTELRLIDEFGRTKESYKVPYGAQLAKGDGEAVNGGETVANW
DPHTMPVVSEVSGIIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALRI
TDAQGNDVLIPNTDMPAQYFLPGKAIVQLDDGITINAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIENAGSSEFLEGEQVEYARVKVSNRILEDDGKVPATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMKRRQSQLPTD
ETETTISADEASANLAELLNAGFGGLKD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aaaattgctctggcatcacctgatatgatccgttcatggtcatttggtgaagttaaaaag
ccagaaacaattaactaccgtacgttcaaaccagaacgtgacggtcttttctgcgcccgt
attttcggaccagtaaaagattacgaatgtttgtgtggtaaatacaaacgtttaaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgaa
cgtatgggtcacatcgaattagcttctccagttgctcacatttggttcttgaaatcactg
ccgtcccgtatcggtctgctgctggatatgccactgcgcgatattgaacgtgtactgtat
tttgaatcttacgttgttgttgaaggcggtatgaccagccttgagcgcggacaaatctta
acagaagagcaatatcttgatgcattagaagaattcggtgacgaatttgatgcgaagatg
ggtgcagaagctgttcagaatctgttgcagagcatggatctggaacaagagtgtgaaacg
ctacgtgaagagttaaatgaaactaactctgaaactaaacgtaagaaactgactaaacgt
atcaagttacttgaagcattcatgcaatcaggcaataaacctgaatggatgatcttaact
gtactgcctgtgttaccaccagacttacgtccactggttccacttgatggcggtcgtttt
gcgacttcagacctgaacgatttatatcgtcgtgtgatcaaccgtaacaaccgtttaaaa
cgcctgcttgatttagcagcaccagacattatcgtacgtaacgaaaaacgtatgttacaa
gagtctgtggatgcgttattagacaacggtcgtcgtggtcgtgcgattacaggttctaac
aaacgtcctctgaaatctttggctgatatgatcaaaggtaaacaaggtcgtttccgtcaa
aacctgttaggtaaacgtgttgactattctggtcgttctgtaatcaccgttggtccatac
ctgcgtctgcatcagtgtggtctaccgaagaaaatggctcttgagttattcaaaccattt
atttacggaaaactggaaacccgtggcttagcgacaacaattaaagccgctaaaaaaatg
gttgagcgtgaagaagctgttgtttgggatatcttagatgaagttatccgcgaacatcca
gtgatgctaaaccgtgcaccaacacttcaccgtttaggtattcaggcatttgaaccaatc
cttatcgaaggtaaagctattcagttacacccactcgtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggcggttcacgtaccattgacattagaagcacagttagaagct
cgtgcactgatgatgtcaacaaacaacattctgtctccagcaagtggtgacccaatcatc
gttccttcacaggacgttgtattaggtctttactacatgactcgtgactgcatcaatgcc
aaaggtgaaggcatggtgttaagtggtcctaaagaagctgaacgcgtttatcgcgcaggt
ttagcctctttacacgcacgcgttaaagtacgtatcactgaagagatcaaagatggcgaa
ggtaatatcaccactgaaactagcttaaaagatacaactatcggccgagctattttatgg
atgatcgtaccaaaaggcctaccttacgcactggttaaccaaccattaggtaagaaagca
atttctaaaatgctcaatacctgttatcgcgtaatgggcttgaaaccaacagttattttt
gctgaccaaatcatgtataccggttttgcttacgcagcacgttcaggtgcatcagtaggt
atcgatgacatggttatccctgctaaaaaagcagagatcattgcagaagctgaagcggaa
gttgcagaaattcaggaacagttccaatccggtctggtaacagcgggcgaacgttacaac
aaagtcatcgatatttgggctgcagcgaatgagcgtgtagcaaaagcgatgatggaaaac
ctgtctactgaaaccgttattaaccgtaatggtgaagaagaacaacaagtatctttcaac
agcatctttatgatggctgactccggtgctcgtggttctgcagctcagatccgtcagtta
gcaggtatgcgtggtctgatggctaagccagatggctcaatcatcgagacaccaatcaca
gcgaacttccgtgaaggcctgaacgtactccagtacttcatctcaacccacggtgctcgt
aaaggtcttgcggatactgcactgaaaacagcaaactccggttacttgactcgtcgttta
gttgacgttgcacaagacttagtcgtaacagaagacgactgtggtacaaccgaaggtgtt
atgatgactccggttatcgaaggtggtgatgttaaagaaccactgcgtgaacgtgtatta
ggtcgtgtggctgcagaagatattctgaaaccaggcactgccgatattcttgttccacgt
aacaccctgttaaacgaaaaactgtgtgatctgttagaagaaaactcagttgacagcgtg
aaagtacgttcagttgtaacctgtaacacagacttcggtgtatgtgctaaatgttatggt
cgtgaccttgctcgtggtcatatcattaacaaaggtgaagctatcggtgttatcgcggca
cagtcaatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatcaagcattcaagtacgtaacaaaggtactctgaagctg
ttcaatgcgaagttcattactaatactgctggtaaattagttatcacttctcgtaacact
gaattacgtttaattgacgaattcggtcgtacgaaagaaagctataaagtaccttacggt
gctcaattagcgaaaggtgatggcgaagcagttaacggtggcgaaactgttgctaactgg
gatccacatacaatgccagttgtgagtgaagtatctggtatcatccgttttgctgacatg
gttgatggtcaaactatcacacgtcaaacagatgaattaacaggtctttcttcactggtt
gttctggattcagcagagcgtacaggtagcggtaaagatttacgtccagcgttgcgcatc
actgatgcacaaggtaatgacgtattaatcccgaatactgatatgccagcacagtacttc
ctgccaggtaaagcaattgttcagttagacgatggcattacaattaacgcaggtgacact
ttagcgcgtattccacaagaatctggcggtactaaagatatcaccggtggtctgccacgc
gttgctgacctgtttgaagctcgtcgtccgaaagagcctgcaatccttgctgaaatcagc
ggtattgtttcgttcggtaaagagactaaaggtaaacgtcgcctagttatttctccatta
gacggtagcgatgcatacgaagagatgatccctaaatggcgtcagcttaacgtattcgag
ggtgaggttgtggaacgtggtgatgttatctccgatggtccagaatcaccacacgacatt
ctgcgcttacgtggtgttcatgcggttactcgctatatcactaacgaagtacaggaagtt
taccgtttacaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctacgtaaagttaccattgagaacgcaggaagctctgagttcctcgaaggtgaacaggtt
gaatacgctcgcgttaaagtatcaaaccgtattctggaagatgatggcaaagtaccagca
acgtatgctcgtgacctgttaggtatcacgaaagcatctctggcaactgaatccttcatc
tctgctgcatcgttccaagaaacaactcgtgttctgacggaagctgcagtagcaggtaaa
cgcgatgagttacgtggattgaaagaaaacgttattgttggtcgcttgatcccagctggt
accggatatgcgtatcaccaagatcgtatgaagcgtcgtcaatcacaactgccgacagat
gaaactgaaacaacaatcagtgctgatgaagcatctgctaacttagcagaattactgaat
gctggttttggtggattaaaagactaa
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