Prosopis cineraria: 129293254
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Entry
129293254 CDS
T09047
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129293254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129293254
03041 Spliceosome [BR:
pcin03041
]
129293254
03009 Ribosome biogenesis [BR:
pcin03009
]
129293254
03016 Transfer RNA biogenesis [BR:
pcin03016
]
129293254
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129293254
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129293254
Spliceosome [BR:
pcin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129293254
Complex C
U4/U6.U5 tri-SnRNP related factors
129293254
Ribosome biogenesis [BR:
pcin03009
]
Eukaryotic type
Pre-60S particles
Helicases
129293254
Transfer RNA biogenesis [BR:
pcin03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129293254
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
Jun
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
129293254
NCBI-ProteinID:
XP_054787091
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MAESPSLGKRKEAEDSQVNETSTQQSLSNKRRNLARTCVHEVAVPIGHVSSKDESIYGTL
SNPVYNGEMAKSYPFTLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTISPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQP
CHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFVKLLDDFSKQKQSSAKSNGK
TAKGGSASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTQEEKDTVE
HVFRNAVLCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVVKELVELLFQEGLVKALFA
TETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDE
QMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQYEKALP
DIGKKVSKLEEEAALLDASGEAEVAEYHKLKLEIAQLERMMMLQIIRPERILYFLLPGRL
VKIREGGTDWGWGVVVNVVKKPSGGGYIVDTLLHCSPGSTENSSRPKPCPPRPGEKGEMH
VVPVQLPLISALSKLRISIPPDLRPLEARQSILLAVQELGNRFPQGLPKLNPVKDMDIRD
QEIVDIVNQIEELEKKLYAHPLHKHQDVDQIKCFQRKAEVNHEIQQLKTKMRDSQLQKFR
EELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIAAL
ASCFIPGDKSNEQIQLRTELARPLQQLQDSARRIAEIQHECKLDINVDEYVESTVRPYLM
DVIYSWSKGASFADVIQMTDIFEGSIIRSARRLDEFLNQLRAAAEAVGEVELEKKFAAAS
ESLRRGIMFANSLYL
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatctccgtctcttggaaaacggaaagaagcagaggattcacaagtcaacgag
acttcaactcaacaatccctctcaaataaacgtcgcaatttggcgcgaacatgcgtgcat
gaagtggctgtccccattggccatgtttcatcaaaggatgaatcaatttatggcactctg
tcaaatcctgtgtataacggagagatggcaaaatcatatcctttcacgctcgaccctttt
cagcaggtatccgttgcctgtttagaaagaaacgagtctgttttggtctctgcacatact
tctgctggtaaaactgctgttgccgagtatgccattgcaatggcttttagggataagcag
agggttatatatacttcgcccctcaaagctttgagcaatcagaaatacagagaacttagt
caggagtttaaagatgttgggttgatgaccggtgatgttactatttcacctaatgccagt
tgtctagtaatgacaaccgagattcttagaggaatgctttacaggggttctgaagtttta
aaggaagttgcatgggttatatttgatgaaattcattacatgaaagatcgtgaaagagga
gttgtttgggaagagagcataatatttttgcccccggctatcaagatggtatttttatcg
gcgaccatgtcaaatgccacggaatttgcagaatggatttgtaatctgcacaaacagcct
tgtcatgttgtgtataccgatttccgaccaactcctttgcagcattatgtcttccccatg
ggtggtagtggtttgtatttagtagtagacgagaatgagcaatttagggaagacaatttt
gtgaaattgctggatgacttttccaagcagaaacaaagcagtgcaaaatctaatggaaaa
actgcaaaaggcgggtctgcatctggcggttctgacatatacaagatagtgaagatgatc
atggaacgaaaattccaacctgttattatcttcagctttagtagaagagaatgtgagcaa
catgccatgtctatgtccaaacttgatttcaatacccaagaggaaaaggatacagtcgaa
catgttttccgtaatgcagtactttgtttgaatgaagaagacaggagtttacctgctatt
gaattgatgttgcctcttcttcagcgaggaattgctgttcatcattctggccttcttcct
gttgttaaagaattggttgagctccttttccaggaaggccttgtaaaggctctctttgcc
actgaaacttttgcaatgggcttgaacatgcctgctaaaactgtcgtgttcacagctgtt
aagaagtgggatggtgatagtcaccgttatattggatctggtgaatatatccagatgagt
ggaagggctggtcgtcgtggcaaagatgaacgtggaatttgcatcattatgattgatgag
cagatggaaatgaataccctcaaggacatggttttgggtaaacctgctcctttagttagt
acattcaggctaagctattactcaattttaaatttgatgagccgtgcggaaggacagttc
actgctgaacacgtaataaggaattcatttcatcaatttcagtatgaaaaggccttacct
gatataggaaaaaaggtttcaaagctggaggaggaagctgccttgctggatgcatcaggg
gaggctgaagtagctgaatatcataaacttaaactggaaatagcacaacttgagaggatg
atgatgttgcaaataataaggcccgaaaggatactttattttcttcttccaggtcgtttg
gtgaagataagagaagggggaactgattggggctggggggttgtagtcaatgttgttaag
aagccttctggtggtggttatatagtagatactttacttcattgctcacctggttctact
gagaacagttcacggccaaaaccttgtccaccccgtcctggagagaaaggtgaaatgcac
gtggtcccagttcaattgccactaatttctgcccttagtaaactaaggatttctatacct
cctgatcttcgacccttggaagcaagacaaagtatactgcttgctgtacaggagctgggg
aatcgttttcctcaaggtcttccgaagcttaaccctgtgaaagacatggacatacgagat
caagaaattgttgatattgtcaatcaaatagaggaacttgagaaaaagttgtatgctcat
cctttgcataagcatcaagatgtggatcaaattaaatgttttcagaggaaagcagaggtg
aatcatgaaattcagcagctgaagacaaaaatgcgtgattctcagctgcaaaaatttcgg
gaggagctcaagaaccgctcacgagttttaaagaagcttggtcatattgatgcagatggt
gtagttcagttgaagggacgggcagcttgtttaattgacacaggcgatgaacttcttgtt
actgaattaatgtttaatggtacatttaatgatcttgaccatcatcaaattgctgctctt
gcaagttgttttattcctggagataaatcaaacgagcagatacaattaaggacagagctt
gctagacccctgcaacagcttcaagacagtgcaagaagaatagcagagatacaacatgaa
tgcaaattggatataaacgtggatgagtatgtggagtccacagtaaggccttatttgatg
gatgtcatatactcttggtcaaagggagcaagttttgctgatgttatacaaatgactgac
atctttgaaggaagtatcatcaggagtgctagaaggcttgatgaatttttgaatcagttg
cgtgctgctgcagaggcagtaggggaggttgaattggaaaagaaatttgcagcagcaagt
gaaagccttcgccgaggtattatgtttgcaaactctctgtatctgtga
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