Prosopis cineraria: 129300079
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Entry
129300079 CDS
T09047
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pcin
Prosopis cineraria
Pathway
pcin03013
Nucleocytoplasmic transport
pcin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129300079
03015 mRNA surveillance pathway
129300079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129300079
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129300079
mRNA cycle factors
P-body specific factors
129300079
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
129300079
NCBI-ProteinID:
XP_054794580
LinkDB
All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
MKGALDRTKVVLRHLPPTISMAALLDQIDGSFAGRYNWVSFRPGKTGFSQKNLSYSRAYI
DFKKPEDVVEFAEFFDGHIFVNEKGTQFKVIVEYAPSQRVPKQVSKKDGREGTIYKDSEY
LEFLEVLAKPIENLPSAEIQLERKEAERSGSGTKDIPIVTPLMDFVRQRRAAKGSRRSVS
NGKVSRRVGASSSGSPSSGSLRRGSGKKRVSTTMYVIRDPGKSATVKDKSTYVLVPKQGD
QHLSDRITVTATGDGNQALEDESGVAGPNDSGKKKILLLKGKKRETITVSDSDSMSQMHN
LASAKAASGLTTSKQNQRQEGSGRIIRRILSNKELRQSQSSRPHSEQQIPASILEKEKRA
PRPSHVQLITKGSNGAPEDRISANDMHVSSERQGSHSRNKDRHDRGIWSSFSNGNDDFLP
LSATSQVDSTKGSHTESKHDMSDAKRGDIKILGNARPSQSSENGFSKHLGRRGPTHGMKD
ADGYSNSSEGKHPRRSSASVYGSHEKSMLTYIFGASLAGGWILSLFWLTDNYK
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtgcgttggatcggacgaaggtcgtgctgcggcacttgcctccgaccatttct
atggctgcgctgctggaccaaatcgatggctccttcgctgggcgctacaattgggtttcc
tttcgtcctggcaaaaccgggtttagccagaagaatctatcttattctagagcctacatt
gacttcaagaagccagaggatgttgtagagtttgcagagttctttgatgggcatatcttt
gtgaatgagaagggaactcagttcaaagtcattgttgaatatgctccttctcaacgtgtt
ccaaagcaggtgtcaaaaaaggatggccgtgaaggaaccatatacaaagattctgagtat
ctggagtttcttgaagttcttgccaagcccattgagaatcttcctagtgctgagatacag
ttggagagaaaggaagcagaacgatctggaagtggtacaaaagacattcctatagttaca
ccattgatggactttgtgcgtcagagaagagctgccaagggatcacggagatcagtgtct
aatggaaaagtgagcagaagggtcggtgcatcatcaagtggaagtcctagttctggttca
ttaagacgaggctctgggaagaaaagggtttccaccacaatgtatgttataagagaccct
ggtaaaagtgctactgtaaaagacaaatcaacttacgttcttgttccaaagcaaggtgat
caacatctttctgatagaattacagttacagccactggtgatggaaatcaagcattggaa
gatgagagtggagttgccggacctaatgattctgggaagaagaaaatcctgcttcttaaa
gggaaaaaaagggagacaattactgtgtctgattccgatagcatgtcacagatgcacaat
ttagcttcagctaaggcagcttctggcttaaccacttcaaagcagaaccagcgccaggaa
ggtagtggaagaataattagacgcatactctcaaacaaggaattacgtcaaagccagtca
tccaggccccactctgagcagcaaattccagcatccattttggagaaggaaaaacgggca
cctcgtccctcacatgtgcaattgattacaaagggttcaaatggggctccagaagatagg
attagtgcgaatgatatgcatgtttctagtgagaggcaggggagtcattccagaaacaag
gacaggcatgatcgtggcatatggtcatctttttctaatggaaatgatgacttcttgcca
ttgtctgcaacctcacaagtagattctaccaaaggaagtcacacagagtctaaacatgac
atgtcagatgcaaaaagaggggatataaaaattcttggaaatgcgcgtcccagtcagtca
tcagaaaatgggttcagtaagcatcttggtcgccgtggaccaacgcatgggatgaaggat
gctgatggctattctaattcaagtgaagggaagcatcctagaagaagcagtgcgtctgtt
tatggttcacatgagaaaagcatgctgacttacatttttggagcatctttagctggtggc
tggattctgtcgcttttttggttgacagataattataagtaa
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