Prosopis cineraria: 129304846
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Entry
129304846 CDS
T09047
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pcin
Prosopis cineraria
Pathway
pcin03022
Basal transcription factors
pcin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129304846
09124 Replication and repair
03420 Nucleotide excision repair
129304846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcin03021
]
129304846
03400 DNA repair and recombination proteins [BR:
pcin03400
]
129304846
Transcription machinery [BR:
pcin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129304846
DNA repair and recombination proteins [BR:
pcin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129304846
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Motif
Other DBs
NCBI-GeneID:
129304846
NCBI-ProteinID:
XP_054800643
LinkDB
All DBs
Position
Unknown
AA seq
430 aa
AA seq
DB search
MNNSAERPLNGGVEEDDDEDEANGGGLEAWERTYAEDRSWESLQEDESGMLRPIDNKAIY
HAQYRRRLRALASTAGATRIQKGLIRYLYIVIDLSKAAAETDFRPCRMAVIGKQVEAFIR
EFFDQNPLSHVGLVTIKDGVAHCLTELGGSPESHIRALMCKMECSGDPSLQNALELVHGY
LDQIPSYGHREVLILYSALNTCDPGDIMETIQKCKKGKIRCSVIGLAAEMFVCRHLCQET
GGTYSVAVDEAHLKELILEHAPPPPAIAEYATASLIKMGFPQRAAEGSIAICTCHEEAKE
GGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSPSSRKDPHQK
APNSCFGCQQSLLNPGNKPGLSVICPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKMVA
AERLPTSFLP
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaataatagtgctgaaagaccacttaatggaggggtagaagaagatgatgacgaggat
gaagcaaatgggggaggtcttgaagcatgggagagaacttatgcggaggatagatcatgg
gaatctttgcaggaggatgaatctgggatgcttcgtccaatagataataaggccatttac
catgctcagtatcgcaggcgtcttcgagctctggcttcaacagcaggcgctactcggatt
cagaagggccttattcgctacctttatattgttattgacctgtctaaggcagcagcagag
acagactttcgtccatgtaggatggctgtgataggaaaacaagttgaggcgtttatcagg
gaattttttgatcagaacccactgagtcatgttggtcttgtgactatcaaggatggagtt
gctcattgcttaacagaacttggtggcagtcctgagtcccatattagagctttgatgtgt
aaaatggaatgctcaggtgacccttccctacaaaatgcactagaacttgttcatggctat
ctagatcaaattccatcatatggtcatcgagaggttctgatcttatattcagctcttaac
acttgtgatcctggtgatataatggaaaccatccagaaatgcaaaaagggtaaaataaga
tgctcagtcattggtcttgctgctgaaatgtttgtatgcagacatctttgtcaagaaact
ggaggaacatactctgttgcagtggatgaggcccacttgaaagagctaattcttgagcat
gcaccaccacccccagcgatagcagagtatgctactgctagtttaatcaagatgggtttt
cctcaaagagcagctgagggttccattgcaatttgtacatgtcatgaagaggctaaggaa
ggtggtggatacacttgtccaagatgcaaagtacgtgtttgtgagcttcccactgaatgt
cgtatctgtggattgactcttatctcttcaccccacttggcaaggtcatatcatcatctc
ttcccaatagtgccttttgatgaggtgtctccatcatcccgaaaagacccacatcagaag
gctcccaactcttgttttgggtgtcaacaaagtcttcttaatccgggaaacaagcccggt
ctttctgttatctgccccaaatgcaaacagcatttctgccttgattgcgacatctatatt
catgagagcttgcacaactgcccaggctgtgagagcttcaggcattctaagatggtcgct
gcagaaagattgccgacctcctttcttccatag
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