Prosopis cineraria: 129308199
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Entry
129308199 CDS
T09047
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129308199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcin03400
]
129308199
Enzymes [BR:
pcin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129308199
DNA repair and recombination proteins [BR:
pcin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129308199
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
T_Ag_DNA_bind
Motif
Other DBs
NCBI-GeneID:
129308199
NCBI-ProteinID:
XP_054805220
LinkDB
All DBs
Position
Unknown
AA seq
1155 aa
AA seq
DB search
MTDQTEFSVLCSLFTWTQRSKSSAKKRSKFRKFLDTFCRDKDYFSAIRLILPNLDRERGS
YGLKESVLATSLIDALGMSRESEDALRLINWRKGGANTGAHAGNFALVAAEVLQRRQGLA
SGRLTIRELNELLDKLASSENRSEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLARRVASATEAWK
KLHGKEVVVECKFDGDRIQIHKNGTNIHFFSRNFLDHSEYQHGMSDIILRNILVDRCILD
GEMLVWDKSSNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQTLKERH
ELLCKVVRPLKGSLEILIPNGGLNSNCPSGDACWSFIARSVDEVERFFKETIENRDEGIV
LKDLGSKWEPSDRSGKWMKLKPEYIRAGSDLDALIIGGYYGSGRRGGEVAQFLVGLAERP
SPSAHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPKKKPPSFYQVTNHSKERPD
VWIESPDKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFIELVH
SSNGTTKASTEYGSMQDSKSKRIKSSKREVKKSMPVVPSHLIQTDVSNVKGGSLIFSNMM
FYFVNVPSSHSLDSLHKMIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDIIHYS
WILDCCTQKKLIHLQPKHFLFLSELTKKKLYEEIDEFSDSYYLDLDCADIKQLFSNIPRS
KKDVSTINYYRKKYCPNDKWSHFQECSIYLHTFLPPSKGDWGVLLGLSLRRLQSEILMSG
GRVTDSPTSATHFVAFSVPGYNVDFKEMLASFTSVEGKFLSSKRLHVVGSQWLEDCLKQG
RRLPEQTYTLKPSGIEELTAEDCKYDLASEGYCGANNVEEQSSSLVSENRSQLRSAKAVD
ETLVSVEKCGKRKRGRPAGIGSKMVKTAGNQTHRSRARIGIRPAKICEYGTDESGSHDEK
PCAGEIDTREFSLDSHNGAKVPEIVMLQNSDPSKRDDAVRQEVLKDGEHEEYSVPEIGKT
EQHNDQNSRTEKLEIMADPIQAMLFDMFPSLATKEVDKTKNENVDDKPPEQSNAGPTRKK
KVSYKDVASELLKDW
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccagacggagttcagtgttctatgcagcctcttcacatggactcagagaagc
aagtcctctgccaagaagcgctccaagttccgcaaattcctcgataccttctgcagggac
aaagattatttcagtgcgattcggttgattcttcccaatctcgaccgagagagaggctcc
tatgggctcaaggagtcggttctcgctacctctctcattgacgctcttgggatgtccagg
gagtccgaggacgctctgcgtctcatcaattggcgcaaaggtggtgcaaacaccggtgcc
catgctggaaattttgctcttgtcgcagctgaggtgctgcaacgtaggcaagggttggca
tctggtagattgacaataagggagttaaatgagctgcttgataaactagcttcaagtgaa
aacaggtctgagaagacttcagttctttctacccttattcaaaagacaaatgctcaggaa
atgaagtggattatcatgataatactcaaagatctaaagcttggaattagtgaaaagagc
attttccatgaattccatccagatgctgaagacttgtttaatgtaacttgtgacttgaaa
ttagtttgtgaaaagctaaaggatcggaatcaacgtcataagcgacaggatattgaagtt
ggaaaagctgtgcgccctcaactagcaaggagagttgctagtgcaactgaagcatggaaa
aagctccatgggaaggaagttgttgtcgagtgcaagtttgatggtgatcgaatccaaatt
cataaaaatggaacgaatatacatttcttctcaaggaactttcttgaccattcagaatat
caacatgggatgtcagacatcatattgcgaaatattcttgttgacaggtgtattcttgat
ggtgagatgttggtttgggataaatcctctaaccgttttgccgaatttggttcaaatcag
gaaattgcaaaggcagcgagggacgggcttgatagtgatagacagttatgttacgttgca
tttgatatcctttatgttggagatacaagtgtaatacaccagactttgaaggaaagacac
gagcttctctgtaaagttgtgaggcccttgaagggtagtttggaaattttaatacctaat
ggtggtctcaactctaattgtccatctggggatgcttgttggtcatttattgctcgtagt
gtggatgaagttgagagatttttcaaagaaactattgagaatagagatgagggcattgtt
ctgaaagaccttggttccaaatgggaacccagtgaccgaagtgggaagtggatgaaattg
aagccagagtacatacgtgctggttctgatctggatgcgcttatcataggtggctattat
ggctctggacgaagaggaggggaggttgctcaatttttggtgggcctcgcggagcgtccc
tcccctagtgctcatcctaagcgatttatctcattttgcagagttggtactggactttct
gatgatgaacttgatgccctagtaaccaagctgaaaccatatttcaggaagtatgaatac
ccaaagaagaagccaccaagtttttatcaagtgactaaccattcaaaagaacgacctgat
gtgtggattgagagccctgacaaatcaataattctctctattaccagtgacattcgaact
atagagtctgaggtatttgctgcaccttacagtctgagatttcctagaattgacagggtg
agatatgacaaaccctggtatgaatgtcttgatgtgcaatcatttatagaactcgtgcat
tctagcaatggcaccacaaaggcaagtacagagtatggcagcatgcaggatagtaaatca
aaacgcattaaatcctctaaaagggaagtaaagaaaagcatgcctgttgtcccttctcat
ctaattcagacggatgtttccaatgtgaagggtggctcgttaatattctcaaatatgatg
ttttattttgtcaatgtgccttcatcccattctcttgattccttgcacaagatgattgct
gagaatgggggaactttctccatgaacttgaataattcagtcacccattgtgttgcagca
gatagcaagggttttaaatttgaagccgcaaaacgtcgtggtgatatcattcattatagt
tggatcttagattgctgtacgcaaaagaagcttattcacttacagccaaagcacttcctt
ttcctttctgaactcacaaagaagaagttatatgaagaaattgatgagttctcagactca
tactacttggatcttgattgtgcggacatcaagcagctcttcagcaatattcccagatca
aaaaaagatgtcagcactatcaactattacaggaaaaagtactgcccaaatgataagtgg
tctcactttcaagaatgctccatttatctccacacttttttgccaccttcgaaaggagat
tggggagttctgttgggactttctctgaggagattgcagtctgaaattctcatgagtggt
ggcagagttaccgatagtcccacttctgctacgcactttgtggccttctcggttccagga
tataatgtagacttcaaagaaatgttagcaagtttcacttcagttgaagggaaatttctg
tcgagcaagaggttgcatgttgttggatctcagtggcttgaagattgtttaaaacaaggc
cgaagattgccagagcaaacatatacattgaagcccagcggaatagaagaactaactgct
gaagactgcaagtatgacttggcttcagagggttattgtggtgcaaataatgtagaagag
caaagttcgtcacttgtctctgaaaacagaagtcagctgagaagtgcaaaagctgttgat
gaaaccttggtgtctgtggagaagtgtggcaaaaggaaacgaggaagacctgcaggcata
ggcagtaaaatggttaaaacagctggcaaccaaactcatcgatcacgagcacgtattgga
ataaggcctgcaaaaatatgtgaatatggaaccgatgaaagtggttctcatgatgaaaaa
ccatgtgctggtgagattgacacgagagaattcagtcttgactctcacaatggcgcaaaa
gtccctgagattgtgatgttacaaaattctgacccatcaaaacgagacgatgcagttagg
caagaggttttgaaggacggtgaacatgaagaatattctgttcccgaaattggaaagacg
gagcagcataatgaccaaaacagtaggactgaaaaacttgaaattatggctgatccaatt
caggctatgctttttgacatgtttcctagccttgcgacaaaggaagttgataaaacaaag
aatgagaatgttgatgataagccaccggagcaatccaatgcggggcctacaaggaaaaag
aaagttagctataaggatgttgccagtgagctgctcaaggattggtag
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integrated database retrieval system
