Prosopis cineraria: 129317814
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Entry
129317814 CDS
T09047
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pcin
Prosopis cineraria
Pathway
pcin03008
Ribosome biogenesis in eukaryotes
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129317814
09123 Folding, sorting and degradation
03018 RNA degradation
129317814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcin03021
]
129317814
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129317814
03009 Ribosome biogenesis [BR:
pcin03009
]
129317814
03016 Transfer RNA biogenesis [BR:
pcin03016
]
129317814
Transcription machinery [BR:
pcin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129317814
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
129317814
Ribosome biogenesis [BR:
pcin03009
]
Eukaryotic type
Pre-60S particles
RNases
129317814
Transfer RNA biogenesis [BR:
pcin03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
129317814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
129317814
NCBI-ProteinID:
XP_054818178
LinkDB
All DBs
Position
Unknown
AA seq
1110 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVIEEEPVVIDCVEIPVDTSKKNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTTFDEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRSRRFR
AAKDAAEAAAEEAKLREEFEREGRKLPPKEDVQVFDSNVITPGTEFMAVLSIALQYYIHL
RLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLSGYDPNTRHCLYGLDADLIMLA
LATHEIHFSVLREIVFTPGQDKCFLCGQMGHVAADCEGKAKRKSRECDEKGSPVVAKKPF
QFLNIWTLREYLEYEMRIPNLPFEIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAIN
LLMAVYKKELRSLGGYLTDGSKPCLSRVERFIQAVGSYEDRIFQKRARLHQRQVERIKRD
KAHARRGDDAAPSVLPESLVPVSRFHGSRLVSAPAAPFQQSGLSYKSNGLKSTRNQVGQA
TTELSNLEIGKPSWGNKDNSERPRKVAKLSSGATIGAAIVEAENSLEIDVQDNKDELKTI
LKERLREKSDAFNSANPEADKIKLGEPGWKERYYEEKFSAKTPEDVELIRRDVVLKYAEG
LCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLSDLTINFELGTPFKPFDQLLGVFPAAS
AHALPEPYRKLMTDPNSPIIDFYPIDFEVDMNGKRYAWQGIAKLPFIEEARLLAEVGKIE
HLLSAEETRRNSVMFELLFVNSCHPLSACISTLDNRCRKMSDRERIEVKEPINPKERGTA
CSGGMNGYISLCVGEPCPPIFRSPVAGMEDIVDNQVICAIYRLPDKHKHITRPPKGVQYP
KKIVTIGDLKPEPVLWHEDFGRRNSESGRQNPPGSISGKQLGEAAHRLLANSLQLKVESN
GHQHMINGELRPYAAPMGPPHSLLPHPVYDSRSGYHGASRPVSTPPPQGPVLLPPYTPIP
TQQYGYTQPYPGPSMHDSHHQSNYYGRSNHERPRSHHYGRNNSSMAHGSGGSARQSYQPS
DANHNARFVNAQGNVPAYNGAYNNYHHGQHGSNFHSSRASSHQQVHQNWVPRSNPGGPRQ
HGHPQQSANRYSQLDRRADRSPQPPPYYGR
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttttatcgttggttggcggagaagtatccgttagtggtggtggac
gtgatcgaggaagaacctgtcgtaatcgactgcgtcgaaattcccgtggatacaagtaag
aaaaaccctaacaacatcgaatatgataacctctacctcgacatgaatggcatcattcat
ccctgcttccaccccgaggatcggccatccccaactacatttgacgaggtgttccagtgc
atgtttgactatattgacaggttatttgtcatggtgcggcctcggaagttgctatttatg
gccattgatggggttgcaccaagggctaaaatgaaccaacagagatctagacggttcaga
gcagcaaaagatgcggcagaagcagctgctgaagaagcaaagttgagggaagaatttgag
agggagggtagaaagcttccacctaaagaggatgtacaagtttttgattcaaatgttatt
accccgggaactgaatttatggctgttttgtcaattgcacttcagtactacattcatctt
aggctgaacaatgaccctggttggcaaaatattaaggttattctttctgatgcgaatgtt
cccggtgaaggggagcacaagattatgtcatatattaggcttcagagaaacctaagtggt
tatgatccaaatacacggcactgcctgtatggtttggatgcggatttgattatgttggct
ttagctacccatgaaattcatttctcagttctaagagagattgtatttactcctggacaa
gacaaatgcttcttatgtggtcagatgggtcatgtggctgcagattgtgaaggtaaggct
aaaagaaagtcaagagagtgcgatgaaaaaggcagtcctgtggtggctaaaaagcccttc
cagtttctaaacatttggactttgagggaatatctggaatatgagatgagaataccaaac
cttccatttgagattgattttgaacgcattgtggatgattttatcttcatgtgtttcttt
gttggaaatgattttctaccacatatgcctacactagagattcgtgagggtgcaatcaac
ttgctgatggcagtatacaagaaagaattaaggtctttgggaggttatttaactgatgga
agcaagccatgcttaagcagggtggaacgctttattcaggctgttggatcttacgaagat
agaatattccagaaaagagctaggttgcatcagaggcaagttgaaagaattaaacgtgac
aaggcccatgcacgaaggggtgatgatgctgcaccatcagttctcccggagtctcttgtt
ccagtttcacggttccatggttctcgtcttgtttcagccccagcagccccatttcaacaa
tctgggctgagttataagtcaaatggcttaaaatcaactagaaaccaagttggccaagca
acaacggagctctcaaatcttgaaataggcaagccttcttggggtaataaagacaactct
gagcggcctcgcaaagttgccaaattatcttcaggagcaactattggtgctgctattgtt
gaagctgagaatagtcttgaaatagatgttcaagataacaaagatgaattgaaaactata
cttaaggagaggctgcgtgagaaatctgatgcattcaactcagctaatccagaagcggac
aagattaagttgggagaaccaggctggaaagagaggtattatgaggaaaaattttctgct
aaaactcctgaggacgttgaattgatacggagagatgttgtcttgaaatacgcagaaggc
ctatgttgggttatgcactattattatgaaggggtctgttcttggcagtggttttatcct
tatcactatgccccctttgcatctgatctgaagggccttagtgatcttacgataaacttc
gagctggggaccccattcaaaccatttgaccagcttctaggggtttttcctgctgcaagc
gctcatgctcttcctgagccatataggaaattgatgactgatccaaactcaccaattatt
gatttttatccaattgactttgaggtggacatgaatggcaaacgctatgcttggcagggt
attgcaaaattaccttttattgaagaagcgcgtcttcttgcagaagttggaaaaattgaa
cacctcttatcggcagaggaaacccgacggaacagtgttatgtttgaattgctttttgtc
aattcttgtcatcctctctcggcatgcataagcacacttgacaacagatgtagaaaaatg
tcagacagagagcgcattgaggttaaggaaccaatcaatcctaaggagaggggtactgca
tgcagtggtggaatgaacggttacatatcactatgtgttggagaaccttgcccaccaatt
ttcaggtcgcctgttgcaggaatggaagatattgttgacaaccaagtcatatgtgcgata
tacagactaccagataagcacaagcacattactcggccacctaaaggagttcaatatccc
aagaagatcgtgacaattggtgatctgaaacctgaacctgttctgtggcatgaagatttt
ggtaggagaaactcagagagtgggaggcaaaaccctccaggatccatttctggcaagcag
cttggagaggcagcacatcgacttctggctaactctttgcaattgaaggtcgaatctaat
gggcatcaacatatgattaatggagaacttcgtccttatgctgcaccaatgggccctccg
cattcattgcttccccatccagtgtatgattcccgctcaggatatcatggtgcatcaaga
cctgtgtcaactcctccccctcaaggccctgtgctactgccaccttacactcctattcct
actcagcaatatggctatactcaaccttatcctggaccatcgatgcatgactcgcatcat
caatcaaattattatggaagaagtaaccatgaacgccctagatctcatcattatggaaga
aataattcatcgatggctcatggtagtggagggagcgcgaggcagagttatcaaccatca
gatgctaatcataatgccaggttcgtgaatgcacaaggaaatgttcctgcatataatggt
gcatataacaattatcatcacggtcagcacggctcgaatttccactcaagtagagcatcg
agtcatcaacaggttcaccaaaactgggttccccgaagtaaccctggtggtcctagacag
catggtcaccctcaacagtcagccaatcgatattctcaactagatagaagagcagacagg
agcccacaacccccaccctattatggccgctga
DBGET
integrated database retrieval system
