KEGG   Paraburkholderia caledonica: CUJ87_22540
Entry
CUJ87_22540       CDS       T05740                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pcj  Paraburkholderia caledonica
Pathway
pcj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pcj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CUJ87_22540 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pcj03400]
    CUJ87_22540 (ligD)
Enzymes [BR:pcj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CUJ87_22540 (ligD)
DNA repair and recombination proteins [BR:pcj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CUJ87_22540 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AXF17126
UniProt: A0A2Z5MKS2
LinkDB
Position
PHRS4_B:complement(1151767..1154274)
AA seq 835 aa
MATARGSQSPPLSRYGKMRDFAHTPEPAPARRATRRPARLGFVIQKHWASRLHYDFRLEL
DGVLVSWAVPKGPCYDPKEKRMAVHVEDHPVEYATFEGTIPPKQYGAGKVIVWDRGTWEP
VGDAHKAMKAGKLVFRLHGEKLAGLWELVRISKPEDSQDQWMMFKKRDEWAQPLAEYDVI
KALPDSVTTKPLGLIEEREPKVSRPAPATPPAIDLSAAVRAPLPAKLELQRATLASSLPT
TGDWIVESKLDGYRMLARVDKGRVRLFTSGGHDWTKKLATLATEVAKLPLSSGWLDGEIV
VLKDGLPDFGALQIAIDGAANDEIVYFLFDLPYCDGSDLTNVPLWARRARLAQLLEKDSD
RIRFSQDFDAPIVQMFEAAAGLGLEGLVLKRRDARYESGRTEAWLKAKCRLRQEFVVCGF
TARGGKGGEVGSLLLGYYVGKKLHDAGSVGTGWNAGTGRDLWQRLLPLERDTSPFDVAVS
KPGRWSRRAAGAERWVHPALVAEVEFAEWTGEGVVRQASFKGLRADKPAHRVIRETGEAL
KPAPLSQAKVTHPERVIDPASGVSKLELVRYYESVAEWMLPHLVDRPIAMVRAPAGIAGQ
TFFQKHAEKTAMPGLKTHDRNLWMNHPPVLTVDNADALLSAAQMNVVEFHTWNSTTQHID
TPDRVIFDLDPGEGVKWKQVQEAALLTRALLEELDLQAWLKTSGGKGLHVVVPLAPRLDY
KSVKSFSQAFVRHLSKTIPDRFSATSGAANRIGKIYVDYLRNGKAQTTAAAFSARARPGM
GVSMPVSWEQLSDLKSGAQWTVQTAREYLSFQTRDPWEAYWSSKQSLASAIKRLR
NT seq 2508 nt   +upstreamnt  +downstreamnt
atggccacagcacgcggttcgcaatctccacctctaagccgttacgggaagatgcgagac
ttcgcgcatacgccggaaccggcgcctgcgagacgagcgacccgtcgcccggcgcgcctc
ggtttcgtcatccagaagcattgggcgagccgcctgcattacgacttccgcctggaactc
gacggtgtgctggtttcgtgggcggtacccaagggcccgtgctacgacccgaaagaaaag
agaatggccgtccacgtggaggaccacccggtcgaatatgcaacattcgaaggcacgatt
ccgccaaagcaatacggtgccgggaaggtgattgtgtgggaccgcgggacgtgggagccg
gtcggggacgctcacaaggcgatgaaggccggcaagctggtcttccgcctccatggcgaa
aagctggccggcttatgggagcttgtgcgtatatccaagccggaggatagccaggaccag
tggatgatgttcaagaagcgcgacgagtgggctcaaccgttagccgagtatgacgtcatt
aaggcgctgcctgacagcgtcacgacaaaaccgctaggcctcatcgaagagcgtgagccg
aaagtatcccggcccgcgccggccactccgccggcgatagacctgtcggccgcagtccgc
gcgccgttacccgcaaaactcgaactgcagcgcgcgaccctggcctcgtcgctacctaca
accggcgactggatagtcgaatccaagctggatggttaccggatgctcgcccgggtcgac
aaggggcgggtacggttattcacaagcggcggccacgactggacgaagaaactcgcgacg
ctggcgactgaagtcgcgaagctccccctctcgagtgggtggctggacggcgagatagtc
gtgctcaaggacgggctgccggatttcggcgctttacagattgcgatagatggcgcagcg
aatgacgaaatcgtctatttcctgttcgacctgccgtactgtgacgggagtgacctgacg
aacgtcccattatgggcgaggcgcgcgcgactggcacagcttcttgagaaggatagcgac
cgcatacgcttcagccaggattttgacgctccaatcgtgcagatgtttgaagccgcagcc
ggactgggactcgaggggctggtgctgaagcgtcgcgacgcccgatatgagtccggacgg
accgaggcctggctgaaagcgaaatgccggttgaggcaggagttcgttgtgtgtggcttc
accgccaggggcggtaaggggggcgaagtcggcagtttgctgctcggctactacgtaggc
aaaaagcttcacgacgcgggtagcgtgggcactggctggaacgctggaacaggcagagac
ctctggcagcgcctgcttcctctcgaacgcgatacgagcccgttcgacgttgcagtatca
aagccaggccgctggtccaggcgtgccgccggcgctgaacgttgggtacatccagcgctg
gttgccgaagtcgagtttgccgagtggacaggcgaaggcgttgtccggcaggcttccttc
aagggcttgcgtgctgataagcccgcgcaccgcgtaatccgcgaaaccggagaagcgctg
aagcctgctcctctctcgcaggcgaaggtcacgcatccggagcgggtcattgaccctgcg
agcggcgtcagcaaactcgaactcgtccgctactacgaaagcgtcgccgagtggatgctg
ccgcaccttgtagaccggccaattgcaatggttcgcgcgccggcgggtatagccggtcag
acgttctttcagaagcacgcggagaagacggcaatgcccggtctgaagacgcacgaccgc
aatctgtggatgaatcatccgcccgtgctcacggtcgacaatgcagacgcgctcctgtcg
gctgcgcagatgaatgtcgttgagttccacacttggaattcaacgacccagcacattgat
acaccggacagggtcatcttcgaccttgaccctggcgagggagtgaagtggaagcaggtt
caggaggccgcgcttctcacgcgggcgttgcttgaggagctagacctgcaagcgtggttg
aagacgagcggcggtaaagggctgcacgtcgtcgttccgctcgcgcccagactcgactac
aaatccgtcaaatcgttctcgcaggccttcgtcagacatctgtcgaaaacgattcccgac
cgcttttccgcaacatcaggggcagccaaccgaatcggcaaaatctatgtcgattacctg
cgcaatggcaaggcgcagaccactgccgccgccttctccgcgcgggcgcggccaggaatg
ggcgtttcgatgcccgtgtcatgggaacaactgtctgacctcaaaagcggtgcgcagtgg
acggtgcaaacggcgagggagtatcttagctttcagacgcgagacccatgggaagcttac
tggtcttcgaaacaatcgctggcgtcggcgataaagcgcctgcgatga

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