Paraburkholderia caledonica: CUJ87_22540
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Entry
CUJ87_22540 CDS
T05740
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcj
Paraburkholderia caledonica
Pathway
pcj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CUJ87_22540 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcj03400
]
CUJ87_22540 (ligD)
Enzymes [BR:
pcj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CUJ87_22540 (ligD)
DNA repair and recombination proteins [BR:
pcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CUJ87_22540 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AXF17126
UniProt:
A0A2Z5MKS2
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All DBs
Position
PHRS4_B:complement(1151767..1154274)
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AA seq
835 aa
AA seq
DB search
MATARGSQSPPLSRYGKMRDFAHTPEPAPARRATRRPARLGFVIQKHWASRLHYDFRLEL
DGVLVSWAVPKGPCYDPKEKRMAVHVEDHPVEYATFEGTIPPKQYGAGKVIVWDRGTWEP
VGDAHKAMKAGKLVFRLHGEKLAGLWELVRISKPEDSQDQWMMFKKRDEWAQPLAEYDVI
KALPDSVTTKPLGLIEEREPKVSRPAPATPPAIDLSAAVRAPLPAKLELQRATLASSLPT
TGDWIVESKLDGYRMLARVDKGRVRLFTSGGHDWTKKLATLATEVAKLPLSSGWLDGEIV
VLKDGLPDFGALQIAIDGAANDEIVYFLFDLPYCDGSDLTNVPLWARRARLAQLLEKDSD
RIRFSQDFDAPIVQMFEAAAGLGLEGLVLKRRDARYESGRTEAWLKAKCRLRQEFVVCGF
TARGGKGGEVGSLLLGYYVGKKLHDAGSVGTGWNAGTGRDLWQRLLPLERDTSPFDVAVS
KPGRWSRRAAGAERWVHPALVAEVEFAEWTGEGVVRQASFKGLRADKPAHRVIRETGEAL
KPAPLSQAKVTHPERVIDPASGVSKLELVRYYESVAEWMLPHLVDRPIAMVRAPAGIAGQ
TFFQKHAEKTAMPGLKTHDRNLWMNHPPVLTVDNADALLSAAQMNVVEFHTWNSTTQHID
TPDRVIFDLDPGEGVKWKQVQEAALLTRALLEELDLQAWLKTSGGKGLHVVVPLAPRLDY
KSVKSFSQAFVRHLSKTIPDRFSATSGAANRIGKIYVDYLRNGKAQTTAAAFSARARPGM
GVSMPVSWEQLSDLKSGAQWTVQTAREYLSFQTRDPWEAYWSSKQSLASAIKRLR
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggccacagcacgcggttcgcaatctccacctctaagccgttacgggaagatgcgagac
ttcgcgcatacgccggaaccggcgcctgcgagacgagcgacccgtcgcccggcgcgcctc
ggtttcgtcatccagaagcattgggcgagccgcctgcattacgacttccgcctggaactc
gacggtgtgctggtttcgtgggcggtacccaagggcccgtgctacgacccgaaagaaaag
agaatggccgtccacgtggaggaccacccggtcgaatatgcaacattcgaaggcacgatt
ccgccaaagcaatacggtgccgggaaggtgattgtgtgggaccgcgggacgtgggagccg
gtcggggacgctcacaaggcgatgaaggccggcaagctggtcttccgcctccatggcgaa
aagctggccggcttatgggagcttgtgcgtatatccaagccggaggatagccaggaccag
tggatgatgttcaagaagcgcgacgagtgggctcaaccgttagccgagtatgacgtcatt
aaggcgctgcctgacagcgtcacgacaaaaccgctaggcctcatcgaagagcgtgagccg
aaagtatcccggcccgcgccggccactccgccggcgatagacctgtcggccgcagtccgc
gcgccgttacccgcaaaactcgaactgcagcgcgcgaccctggcctcgtcgctacctaca
accggcgactggatagtcgaatccaagctggatggttaccggatgctcgcccgggtcgac
aaggggcgggtacggttattcacaagcggcggccacgactggacgaagaaactcgcgacg
ctggcgactgaagtcgcgaagctccccctctcgagtgggtggctggacggcgagatagtc
gtgctcaaggacgggctgccggatttcggcgctttacagattgcgatagatggcgcagcg
aatgacgaaatcgtctatttcctgttcgacctgccgtactgtgacgggagtgacctgacg
aacgtcccattatgggcgaggcgcgcgcgactggcacagcttcttgagaaggatagcgac
cgcatacgcttcagccaggattttgacgctccaatcgtgcagatgtttgaagccgcagcc
ggactgggactcgaggggctggtgctgaagcgtcgcgacgcccgatatgagtccggacgg
accgaggcctggctgaaagcgaaatgccggttgaggcaggagttcgttgtgtgtggcttc
accgccaggggcggtaaggggggcgaagtcggcagtttgctgctcggctactacgtaggc
aaaaagcttcacgacgcgggtagcgtgggcactggctggaacgctggaacaggcagagac
ctctggcagcgcctgcttcctctcgaacgcgatacgagcccgttcgacgttgcagtatca
aagccaggccgctggtccaggcgtgccgccggcgctgaacgttgggtacatccagcgctg
gttgccgaagtcgagtttgccgagtggacaggcgaaggcgttgtccggcaggcttccttc
aagggcttgcgtgctgataagcccgcgcaccgcgtaatccgcgaaaccggagaagcgctg
aagcctgctcctctctcgcaggcgaaggtcacgcatccggagcgggtcattgaccctgcg
agcggcgtcagcaaactcgaactcgtccgctactacgaaagcgtcgccgagtggatgctg
ccgcaccttgtagaccggccaattgcaatggttcgcgcgccggcgggtatagccggtcag
acgttctttcagaagcacgcggagaagacggcaatgcccggtctgaagacgcacgaccgc
aatctgtggatgaatcatccgcccgtgctcacggtcgacaatgcagacgcgctcctgtcg
gctgcgcagatgaatgtcgttgagttccacacttggaattcaacgacccagcacattgat
acaccggacagggtcatcttcgaccttgaccctggcgagggagtgaagtggaagcaggtt
caggaggccgcgcttctcacgcgggcgttgcttgaggagctagacctgcaagcgtggttg
aagacgagcggcggtaaagggctgcacgtcgtcgttccgctcgcgcccagactcgactac
aaatccgtcaaatcgttctcgcaggccttcgtcagacatctgtcgaaaacgattcccgac
cgcttttccgcaacatcaggggcagccaaccgaatcggcaaaatctatgtcgattacctg
cgcaatggcaaggcgcagaccactgccgccgccttctccgcgcgggcgcggccaggaatg
ggcgtttcgatgcccgtgtcatgggaacaactgtctgacctcaaaagcggtgcgcagtgg
acggtgcaaacggcgagggagtatcttagctttcagacgcgagacccatgggaagcttac
tggtcttcgaaacaatcgctggcgtcggcgataaagcgcctgcgatga
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