Procambarus clarkii (red swamp crayfish): 123758648
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Entry
123758648 CDS
T07930
Name
(RefSeq) uncharacterized protein LOC123758648
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123758648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcla03021
]
123758648
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123758648
Transcription machinery [BR:
pcla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123758648
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123758648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFIA_Pcf11
DNA_pol3_a_NI
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
123758648
NCBI-ProteinID:
XP_045599130
LinkDB
All DBs
Position
LG21:complement(7269256..7324555)
Genome browser
AA seq
1440 aa
AA seq
DB search
MPCKNKWSSGNHLVLESSNEYNPCPMPTTTNCISAKKPEVGSPATSTTGIGDTDYRQFTS
PPKRQATDENISPPKDTIIDEKPPEPHQDLGLFSKKDVDYRQLLPRPGLLPTPGLPAAFN
MMDQDDRNPSNRDQPPRDPLAPLSTSENQDSNITHSKRELVPIGIESPLPGAVDPRMRKH
SFNSPHAASWEKFREKNPEFKEYQRQASMSEPDRSIFLGDEDEDMPFCDSPHGPPSRVHN
FRSRTYGNWKDGGPGRHRDGRRYWGEEDEDSLGPQGRSKAAQENFKMILKQALEQRDRGE
ISEHQYQDMANKLRLLTEQEQIREARERERLKHRSLQQSQPFQAGDGPPVSSVGLPSGVG
SLGPGGPGLGPTAAVPGSGRGRGSREGHLSFAQGVRGGRGAFMGPGAPPAARGMGRAGRG
GPGSEDDGWGRGRGRGRRGRGGYQQDDRGWTPKDATLEDEWTGEPDLPFVTDEILKAVAR
DAETRTIEIDGIPREIRTYGENAVILLDWNDPRILTFGEGHCNIVFDEGKFMLPMRIGDD
YKEFTIAGESHRIKLGVPTQELMLDGRGYQCFFGGKPITVHLAGQPRTVSLDGKPPNVNI
GPVRNTEFLAGKIQLVINATKVVHLFLDAKPQRFNIDGKPFVIQFVDALRAVAINNVRFP
VEFGGLPLSISVRGYRRFLRFTSLPQGIIPGQVVIRGMEPDGQKVSSLPGSPAQDKIESA
MKPNRSSPSLEMTRKPPMGYPADKTSSKGVGHPSMGMSSPSDSVFVPHQGPPPKGPVSQA
LPGLPPPRPLHTGPPPHGLLPHGLPRQGLPHQGPPPQGPPPQGPPLQGPPLQGPPLQCPP
PQGPPSQGPPPQVPVSHGPGAMMSQAPPAVPAPSGVMQVSSMGSQMPQQKGLAVPVTLAN
MSHPPPNAIPGSYMTSQLPPNLVKPSQPLSSVPLDLNTLLENLTRTGLIDAKAHDKVKNK
KEELEKKKEEEEEEKEREKDELISFEFMFNTEHLRRRRKWLIECLYRGMQCSSCGLRYPP
EQTLQYSHHLDWHFRQNRRQQESTKKANTRRFYFSTDDWLQYEEIEDVEERVPSMFESEG
MDEAIQAEDAEEPSVAVSSDSTLGVCPSCHDTFSQFFHQETEEWRYHNAIQVEGVNFHPA
CHQDMLRAEAAEKEAAEKEAAEKEAAEKEAAEKEKAEEEKEDGEKEKGEEDKEDGAEKNK
EDKEDSDQAPEKGADKGSEEVPVDSQGSVTEKLEEMSLESKSALRIKEEPMEVEEIDLDG
GNSSQSLPVGMMIKQEVKQEPAECNEADLISRSPEDEDDSSILPNESNEEMVEPTIVPVN
AAETDIASSIDGNTELSNSGTSHTNPTVTKIKFNMSKPSLSNSSTNNNNNNLNNNENSSE
NKKLDHSLLNSSSIEEDIEEFVPPPFTVDYELKPSFKDVELIEQPSVGRGVELSGLCSIM
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atgccttgtaagaacaagtggtcatctgggaatcacttggtattggagtcttcaaatgag
tacaatccttgtcctatgccaacaaccacaaactgcatttcagccaagaagccagaagtc
ggcagtcccgctacatcaaccaccggcattggggacacggattaccgtcagttcacctct
cctcccaagagacaagcaactgatgaaaatatttccccaccaaaggacacgattattgat
gagaaaccgcccgagccgcatcaagatcttggactgtttagtaaaaaggatgtggattac
cggcaacttctacccagaccaggcctcctgcccactccgggcctacctgcagcatttaac
atgatggaccaagatgatcgaaatcctagcaatagagatcagccaccgcgtgaccccctt
gctcctctgagcacatccgaaaatcaggattctaacataacgcattctaaaagagaactt
gtcccaattggaatagaaagcccacttccaggtgctgtagatccgcgcatgaggaaacac
agctttaacagccctcacgcagcatcttgggagaagtttagagagaaaaatccggagttt
aaagagtaccaacggcaggctagcatgtcagaaccggacaggagtatcttcctgggtgat
gaagatgaggacatgcctttctgtgatagtccacatgggccaccaagtcgtgtgcataac
ttccgaagcaggacctatggaaattggaaagatggaggaccaggcagacacagagatggg
aggcgatattggggggaggaagatgaagatagtcttggtccacaaggacggagcaaagct
gcacaggaaaattttaagatgattctgaagcaagcactggaacaaagggatcgcggtgag
atcagtgaacaccagtatcaagacatggctaacaaactgagacttctgacggaacaagag
cagatcagagaggcacgtgagcgtgagagacttaaacaccgaagtttgcagcagtctcaa
ccttttcaggctggtgatggcccacctgtctcatctgttggactgccatctggtgtgggg
agtctgggtccaggtggccctggtcttggtccgactgctgctgttccaggctcagggcga
ggacgaggcagtcgggaaggtcacttaagttttgctcagggtgtaagaggtggccgaggt
gctttcatggggcctggtgctcctcctgcagcacgaggcatgggaagagcaggaagagga
ggtccaggaagtgaagatgatggctggggtagaggaagaggacgtggcagaaggggaagg
ggtggatatcagcaagatgatcgtggttggactcctaaagatgccacgctggaggatgag
tggactggagagccggatctaccttttgttaccgatgagattctgaaggctgtcgctcgt
gatgcggaaacaaggactatcgagattgatggcattccgcgagagatccgtacttatgga
gagaatgctgtaattcttctggattggaatgaccctcgtatattgacatttggggaggga
cactgtaacattgtttttgacgaaggaaagtttatgctgcccatgagaataggggacgat
tataaggaattcacaattgctggagagagtcaccgcataaaacttggggtacctacccaa
gagctaatgcttgatggtagaggctaccaatgtttctttggtggcaaacccattactgtt
cacctggccggccagcctcgtactgtcagcctcgatggaaagcccccaaatgtaaatata
ggtcccgttagaaacacagaattcctggcaggtaaaatccagcttgttatcaatgcaaca
aaagtggttcatctattcttggatgctaagccacagcggttcaacattgatggaaaacca
tttgttattcagttcgttgatgctcttagggcagttgccataaataatgtcagattccca
gttgaatttggagggcttcctcttagtatcagcgtgcggggttacagacgtttcttacgt
ttcacatcactcccacaaggtattatcccagggcaagtggtcattcgagggatggaaccc
gacggccagaaagtgtcaagtctgccaggtagtccagcacaggataaaattgaaagtgca
atgaaacctaatcgtagttcaccttctctagagatgactcggaagcctccaatgggttac
cctgctgataaaacttctagcaagggtgtcggacacccttcaatgggaatgtcgtcccca
tctgacagtgtttttgttcctcaccaaggaccacccccaaaggggccagtatcacaggca
cttccaggacttccaccaccgagacctctacatacaggacctccaccccacggccttctg
cctcatggcctaccacgccagggcctaccacatcagggcccaccacctcaaggtccccca
cctcagggccctccacttcagggtccaccactccagggtccaccactacagtgtccacca
cctcaaggtccaccatctcagggtccaccacctcaagttcctgtatcacatggccctggt
gccatgatgtcccaagctccgccggctgttcctgcgccgagtggggttatgcaggtctca
agtatgggaagccaaatgcctcaacaaaaaggattggcagttcctgttactcttgcgaac
atgagtcatccacctcccaatgcaataccaggctcgtatatgaccagtcagttaccccca
aatttggtcaaaccatcacaaccactctcgtctgtgccacttgaccttaacacgttatta
gaaaacctgactcggactggcctcattgatgccaaagcacatgacaaagtcaagaataag
aaagaggaattagagaaaaagaaagaggaggaggaggaggaaaaagagagagagaaagac
gagctgatatcatttgaatttatgttcaacacagagcatctccgaagacgaagaaaatgg
ctaattgagtgtctataccgtgggatgcagtgttcgtcgtgtgggttacgatatcctcct
gaacaaaccctccagtactcccatcacttggattggcacttccggcagaatcgacgccaa
caagaatcaacaaaaaaagcaaatacacgaagattctatttctctactgatgattggtta
caatatgaagaaattgaagatgttgaggaaagagtgcctagtatgtttgaatctgagggc
atggatgaggccatacaagcagaagatgcagaagaaccaagtgtggccgtgtcttcggac
tctacgttaggagtgtgtcctagctgccacgacaccttctcccagttcttccatcaggag
actgaggaatggaggtatcacaatgcgatccaagttgaaggggttaacttccacccagcc
tgtcaccaggatatgcttagggctgaagcagcagagaaggaagcagctgagaaagaagca
gcagagaaggaagcagctgagaaggaagcagcagagaaggaaaaggcagaggaggagaaa
gaagatggtgaaaaggaaaaaggagaagaggataaagaagatggggctgagaagaataaa
gaggacaaggaggattcagaccaagcaccagagaaaggagccgacaaagggagtgaggag
gtaccagtggatagtcaaggttcagtgacggagaaactagaggagatgtccctggagtct
aagtcagctctacgcatcaaagaggagccaatggaagttgaagaaattgatctcgatggt
ggaaattcatcgcagtctctcccagtgggtatgatgatcaagcaggaggtgaaacaggaa
cctgccgaatgcaacgaagccgatctcatttccagatcacctgaggacgaagatgattcc
agcattttgcccaatgagagcaacgaagagatggttgaaccaacgattgtgccggttaat
gcagcggaaacagacattgccagttccattgacgggaacacagagctgtccaactcgggc
acatcccatacaaaccccactgtcacaaagattaaatttaacatgtccaagccaagtcta
agtaacagcagcaccaacaacaataacaacaatttaaataataatgaaaatagtagcgaa
aataaaaaacttgatcacagcttacttaattccagtagcattgaggaagacatagaagaa
tttgtaccgccaccattcacagtagactacgagctgaagccgtctttcaaagatgttgaa
ttgatagaacagccatcagtaggacgtggtgtggagttgtctgggctgtgctcaattatg
taa
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