Procambarus clarkii (red swamp crayfish): 123762629
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Entry
123762629 CDS
T07930
Name
(RefSeq) regulator of nonsense transcripts 3B-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03013
Nucleocytoplasmic transport
pcla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123762629
03015 mRNA surveillance pathway
123762629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123762629
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123762629
mRNA cycle factors
P-body specific factors
123762629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
123762629
NCBI-ProteinID:
XP_045605200
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All DBs
Position
LG34:complement(11416438..11435645)
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AA seq
655 aa
AA seq
DB search
MTVKTSESSRRDGSKSFVDSSAKRPSDNRQNVKNKKDKSNSPLTKVVVRRLPPNMTEEEF
REAVSPLPEHDYFTFCPTDGSLGPNAYTRAYINFKNVDDVYIFRDKFDGYVFVDQKGNEN
PAMVEFAPFQKIPKRTSGKKRDARCGTIDQDPDFLTFLESITNPVTVTLPPLEVVLEEIQ
AQDRELKANNGVMKIKTPLLEFIEQKKAEKLRSKEEKKEERRRKEFERKKAREDDKRKKK
EVKDHRDIRKKEELKDDNSVKVLRPERIKDDYSSDVRLSRKEREKDRYEKERQRRLEEDR
QKREREKGRLMKKEKEREDRIRRHEEKAKVKEDERSRHREEVKEEWQEERLHVNKPEGAK
SKRYSEGRRKEEREREKRIKEEKDKEKKSKDEQEKEAKPKMVEDKVSEDISEATLPVEVF
ETREADQEVSEERLSKDGINQEHIGKEPQERDENSEEKPSARKKREKDPRVERRIRNKDR
PAMALYRPGQSRLSSRMRQDREEGAETSSSSPSPVMPSGDPKKYQSQSKKENSDTQRDMM
NTKEGSVESRSDSVDLDPDYSKDKDVRGRESKAFRESRVKEGETNSERFYSQFNEGTSKT
HHTGRKWETEDDIEVRDGAHREQGSDVGDSADVTVDMKKFPGVKTMTFRRSVSRE
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcaaaaccagcgaatcctcaaggagagacggttccaagagctttgttgacagc
tctgccaagcggccgtcagataacagacagaatgtcaagaacaagaaagacaagagcaac
tctcctctcaccaaggtggtggtacgccgacttcctcctaacatgacagaggaggagttc
cgtgaagctgtctctcctcttccagaacatgactactttaccttctgtccaactgatggc
agtcttggtcccaatgcatatactcgagcatacataaacttcaagaatgtggatgatgtc
tatatattcagggacaagtttgatggttatgtatttgttgatcagaaagggaatgaaaat
ccagccatggtggagtttgctccttttcaaaagattccaaagcgcacgagtgggaaaaag
agagatgcaaggtgtggaaccatagaccaagacccagatttcctcaccttcttggagtcg
atcaccaaccctgtaactgtgacactgcctccgctagaggtcgtactcgaagagattcaa
gcacaagatagggagctgaaggcaaacaatggagttatgaaaatcaagacacctttactt
gagtttattgaacaaaagaaagctgaaaagttgcgaagtaaggaagagaaaaaggaggag
aggaggagaaaggaatttgaaaggaagaaagcaagagaagatgataaaagaaagaagaag
gaagttaaggatcacagggacataagaaaaaaggaagagctaaaagatgataactcagta
aaggttttgcgacctgaaagaatcaaggatgactacagctcagatgtgaggctttcaagg
aaggaaagagagaaagacaggtatgagaaagaacgccaaaggagattagaagaagacaga
caaaaaagagaacgtgaaaaaggacgactaatgaaaaaggaaaaggagagagaagatagg
ataagaagacatgaagaaaaggcaaaagtgaaggaggatgagagatcaagacatagagag
gaagtaaaagaagaatggcaagaggaaagactgcatgtaaacaaacctgagggggccaaa
tcaaagcgttatagtgagggacgcagaaaagaggagagagaaagggagaagaggattaaa
gaggaaaaagataaagaaaagaaaagcaaagatgagcaagagaaggaagcaaaacccaag
atggttgaagataaagtgagtgaagacataagtgaagcaacactgccagtggaggtcttt
gagaccagggaggctgatcaggaagttagtgaggagaggctttccaaggatggcattaac
caggagcacataggaaaggaacctcaagaaagagatgaaaattctgaagagaagcctagt
gctcgcaagaagagggagaaagatccacgagtggaaagaagaataagaaataaggatcgt
ccagctatggcactgtatcggccgggtcaatctcgactcagcagccgtatgcgccaggac
cgtgaggaaggagcagagacatcatcctctagtcctagccctgtcatgccttcaggggat
cccaagaaataccagtcacagtcaaaaaaggaaaattctgatacccaaagagacatgatg
aataccaaagaaggatctgtagaatctaggagtgactcagtggatctcgaccctgattat
tccaaggataaggatgtgaggggcagagaaagcaaggctttcagggagagcagagtcaaa
gaaggtgaaactaatagcgagaggttctacagccagtttaatgaaggaaccagcaaaact
catcacacaggacgcaagtgggagaccgaggatgacattgaggtgcgagatggagcccat
cgtgagcaaggctctgatgttggggacagtgcagatgttacagttgatatgaaaaaattc
ccaggagtaaagacaatgacattcaggaggagtgttagccgagaatag
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