Pedobacter cryoconitis: AY601_4200
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Entry
AY601_4200 CDS
T04341
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AY601_4200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_4200
Enzymes [BR:
pcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AY601_4200
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AY601_4200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMQ01049
UniProt:
A0A127VJG0
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All DBs
Position
4908856..4912197
Genome browser
AA seq
1113 aa
AA seq
DB search
MNIRDLINRYKTDERIEALAKTLNSGKGNKLQLKGLVGSADATIAVTTYFLLHKPQLFIL
PDREEAAYFMADLESILEKEVLIFPSSFRKAFDFTQVDTANVLARAEVLNELNHNSSFGK
IVVTYPEALAEKVINRAVLEKNTLEISLGVKLGIDFINEFLVDYDFNRTDFVYEPGQFSI
RGGIVDIFSFSHDLPYRIEFFGDEVESIRTFEIESQLSVEDVKTFTIIPNVQSKYLTESN
INLLDYVENDTQLWFKDVQFTLDVIKTGYKKAVELWKALPAKEKQENLDWIDPKFAFSDE
RMIGDILHDFSVIEFGKQFFYKTDNVFLFDTKPQPSFNKDFNLLIHNLKENEKNGIHNFI
SSSSPKQTERLYAILDDIDKTAKFVPVNIQLREGFIDPQQSIAFYTDHQIFDRFYKYKLK
RGYQRSQAITMKDLRDLKPGDFVTHIDHGIGKYAGLEKVEVNGKTQEMIRLVYADNDLLY
VNINSLNRIAKYSGKDGTPPKMNKLGTEAWDKLKKTTKKKVKDIARDLIKLYALRKSQVG
TAFDPDGYLETELEASFIYEDTPDQMKATNDVKKDMEAPHPMDRLVCGDVGFGKTEIAIR
AAFKAVANGKQAAVLVPTTILALQHFKTFSGRLKEFPCKVDYINRFKTNKQIKETLAQVE
EGKVDIIIGTHRLLSKDVKFKSLGIMIIDEEQKFGVSAKEKLRALRVNVDTLTLTATPIP
RTLHFSLMGARDLSIMSTPPPNRQPVNTELHVFNDKLIQEAVQFELDRGGQVFFIHNRVN
DLPQLGGLIQTLVPKARIGIAHGQLDGDALEDVMLDFINGEKDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNIAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKSDEFKELFKDDKE
RPFVTFTQIDTDLELYIPDDYVTNITERYNLYTELSKLDNESQLTAFETSLKDRFGAVPK
PVKTMLNVLRLQWTAKKLGFEKLSFKKGVLRGYFIADKQSNFFDSPMFHKILNFAQQHPR
MCNLKEVKNTLRIAFEDLKTVDEAIQMLQMVAE
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
gtgaacatccgcgacctgatcaatagatataaaactgatgagcgcatcgaagcgcttgca
aagaccctcaattcgggtaaaggtaataaacttcaattaaaaggtttagtaggctctgcc
gatgctacaattgccgttaccacctacttcctgctgcataagccacaattatttattctt
cctgaccgagaagaagccgcttattttatggcagacctggagagtatacttgaaaaagaa
gtcttgattttcccttcctctttccgtaaagcctttgatttcacgcaggtagatactgct
aatgtgctggccagagcagaagtactcaatgaactgaatcacaactcttcttttggaaag
atcgtggtgacctatcctgaagcgcttgccgaaaaagtgattaacagagctgtcctggaa
aaaaatacactggaaataagtttaggtgtaaaactaggcattgactttatcaatgaattt
ctggttgattatgactttaaccgcaccgattttgtttatgaacccggtcagttctctatc
cgtggcggtatcgttgacattttctctttttcccatgatcttccttaccggatagaattt
tttggcgatgaagtagagagcatccggacttttgaaatagaaagtcaactctccgtagaa
gacgttaaaacctttacgatcattcctaacgtacaatccaaatatctgacagaaagcaat
attaacctgctggattatgtagaaaatgatacacagctctggtttaaagatgtacaattc
actttggatgtcattaaaaccggttataaaaaggccgtagaattatggaaagcactccct
gcaaaagagaaacaggaaaatctggactggattgaccctaaatttgccttttctgatgaa
agaatgattggagatattttacatgatttctctgtcatagagtttggaaagcaattcttc
tataaaactgacaacgttttcctgtttgacaccaaaccacagccctctttcaacaaggat
ttcaatctgctgatccataatttaaaagaaaacgagaaaaacggaattcataactttatt
tccagctcttctcctaaacaaaccgagaggttgtacgcgatcttagacgatattgataaa
acagcaaagttcgttcccgtcaatatccagctaagagaaggttttattgatccgcagcaa
tctatagctttttataccgatcaccagatctttgaccggttctataaatataaattaaaa
agaggttatcagcgtagtcaggctatcacgatgaaagacctgagggacctgaaaccaggt
gacttcgtgacccatatagaccatggtattggtaaatatgccggtttagaaaaggtcgaa
gtcaatggcaagacacaagaaatgatccggttggtatacgctgataatgatctgctttat
gtcaatatcaactctttaaaccgtattgcaaaatacagtggaaaagatggtacaccacct
aaaatgaataaactgggtacagaagcctgggataaactaaaaaagactacaaaaaaaaaa
gttaaagacattgcccgggacctgatcaaactctacgctttgagaaaatctcaggtagga
accgcatttgatcccgacggctatctggaaactgaactggaagcttccttcatttatgaa
gacacacccgatcagatgaaagccaccaatgatgtcaaaaaggacatggaagccccacat
ccaatggacaggctggtttgtggtgacgtcggatttggaaaaacagaaatagccatcagg
gctgcgtttaaagctgtagcaaacggcaaacaggctgcggttctggttccaacaactatt
cttgctttacagcatttcaagacattttcaggaagactaaaagagtttccctgcaaagta
gattatattaaccgtttcaagaccaataaacagatcaaagaaacactggcacaagtagaa
gaaggtaaagtagacatcattatcggaacgcatcgtttattgagtaaagacgtgaaattc
aagtcactcggtattatgattatcgatgaagaacagaaattcggtgtctctgccaaagaa
aaattacgtgcattgcgtgtaaatgtagatacccttacacttactgctacaccaatacca
aggaccttgcatttttcactcatgggcgcaagggatttatccattatgagcacaccgcca
ccaaacaggcagccagttaatactgaacttcacgtttttaacgacaaacttatccaggaa
gcagtgcagtttgaactggatcgtggcggacaagtattttttatccataaccgggtaaat
gacctgccacaactcggcggattgatacaaacacttgttccaaaagcccgtataggtatc
gctcacggacaattagacggagatgcgctggaagatgtcatgttagatttcatcaatgga
gaaaaagacgtattggtagctactacgattatcgaagcaggtcttgatattccaaatgcc
aataccatcatcattaaccatgcccacatgtttggtttaagtgatttgcaccagatgcgt
ggaagggtaggaagatctaataaaaaagccttctgttaccttttaagcccacccttatcc
acattgacctccgaagcaaggaaacgtttgagtgctattgaagagttttctgatctgggc
agtggttttaatattgctatgcgtgatctggatatccgtggtagtggaaacctgctgggg
gcagaacaaagcgggttcattgcagaaataggttttgaaatgtaccataagatattagat
gaagcaatacaagagctcaaatctgatgaattcaaagaattattcaaagatgacaaggag
cgccccttcgttacctttacacaaatagatacagatcttgaattatatattccggatgat
tatgtaacaaacattacagagcgatataacctctataccgaactttctaagctggataac
gaatcacagctaactgcgtttgaaacttcgttaaaagaccgctttggtgctgttccgaag
cctgtgaagaccatgttgaatgtcctgaggctacagtggacggccaagaagctgggattt
gaaaaattaagctttaaaaaaggggtattaagaggctattttattgccgataagcaatcc
aatttcttcgattccccaatgttccataaaatattgaactttgcgcagcagcatccccgg
atgtgtaacctgaaagaagtaaaaaacaccttaagaattgcctttgaagatctgaaaaca
gtagacgaagctattcaaatgctgcaaatggttgcagaataa
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