Phanerochaete carnosa: PHACADRAFT_171015
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Entry
PHACADRAFT_171015 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pco
Phanerochaete carnosa
Pathway
pco03022
Basal transcription factors
pco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PHACADRAFT_171015
09124 Replication and repair
03420 Nucleotide excision repair
PHACADRAFT_171015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pco03021
]
PHACADRAFT_171015
03400 DNA repair and recombination proteins [BR:
pco03400
]
PHACADRAFT_171015
Transcription machinery [BR:
pco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PHACADRAFT_171015
DNA repair and recombination proteins [BR:
pco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PHACADRAFT_171015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Motif
Other DBs
NCBI-GeneID:
18909539
NCBI-ProteinID:
XP_007393142
JGI:
Phaca1_171015
UniProt:
K5W1U7
LinkDB
All DBs
Position
Unknown
AA seq
472 aa
AA seq
DB search
MPSVQQASTDSATASEAPSHLLLAFLQSQSQNTLTRLYQRPSSCLSIFRLLGPLERQIVM
NLLWLESSIPASTMATWVPHEVRKTYENSLSILSRLHILPQSAVKLALNPTFKTSLRHAI
IGGGSSGSFGVPATRDEKHSSPSIEVLDAYALERWETILHYMVSSGIATRPSQGVLFLLQ
RSGLMASIHGGSLQITSLGFQFLLHSPHAQLWELLLQYLHMVEERQMDLVEVLSFLFMLS
TMELGREYSVEHLSPTQTAMLEDLRDYGIIWQRRATSKRFCPTRLATTLTSSSPPLPAAG
GVSASAHGQGFIILETNYRLYAYTDNPLQIAVLNLFVTLKSRYPNLVVGAITRESVKKAL
TNGITADQASRQIISYLTTHAHPQMRKNKPLLPVTVQDQIRLWELEKNRMKSQEGYLYTA
FASQADYEYVLNYAKQLGVVLWESSGRRCFFGTLEGHPNIRGFIERRTAGNA
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccgtacagcaggccagcacagactcggcgaccgcctctgaagctccttcccac
ctcctgctcgcctttctgcaatcgcagtcgcaaaacaccctgacacgcctctatcagcgt
ccgtcttcatgtttatccatattcaggcttttgggcccgctcgagaggcagattgtgatg
aatctcttgtggctcgaatcatcgataccagcgtcgaccatggccacatgggtgcctcat
gaggtcagaaagacgtatgagaactccctgtcgatcctgtcgcggcttcacatactgcct
caatctgcagtaaagctggccctgaacccaacattcaaaacgagtctaagacatgctatc
attggcgggggtagtagcggtagctttggcgtacctgcgacccgggatgagaagcactct
tcgccttccattgaagtgttggatgcctatgcccttgaacgttgggagacgatcctgcat
tatatggtctcttctggcattgcgacacgaccctcgcagggcgttctgttcctgcttcag
agaagcggtctcatggctagcatccacggtggttctctacaaatcacgtcacttggattc
cagttcttactccactcgccgcacgcgcaactatgggaattactgctgcaatacctacac
atggtcgaggagcggcagatggaccttgtcgaggtgctcagtttcctattcatgctgtct
accatggagcttggccgggaatactccgtcgagcacttgagtccaactcaaaccgcaatg
ctcgaggatctccgcgattacggcatcatctggcagcgtagggcaacgtcgaagcgattt
tgcccaacacggctggcgacgacgctgacttcctcctcacccccgcttccagctgcgggg
ggcgtatccgcaagcgcacatggccaaggcttcattatcctggaaacgaactaccgctta
tacgcctacacggataaccctttgcagatagctgtactcaatctcttcgtgacactgaag
tcgcggtatccgaatctggttgtcggggctatcacacgtgagagcgtgaagaaggctctt
accaatggcattaccgccgatcaggcgagtcgacagatcatcagttatctcacgacacat
gcgcacccgcaaatgcgcaagaacaaaccgctacttcctgtgaccgtgcaagatcagata
cgtctctgggagctggagaagaacaggatgaagtcacaggaaggctatttgtacacggcc
ttcgcgtcacaggctgattatgaatacgtattgaactacgcgaagcagttaggcgtcgtg
ctatgggaaagctcaggtcggcggtgtttcttcggcaccctggaggggcatccgaacatc
cgagggtttatcgagaggaggacggccggcaatgcttaa
DBGET
integrated database retrieval system
