Phanerochaete carnosa: PHACADRAFT_210427
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Entry
PHACADRAFT_210427 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12830
splicing factor 3B subunit 3
Organism
pco
Phanerochaete carnosa
Pathway
pco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHACADRAFT_210427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pco03021
]
PHACADRAFT_210427
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_210427
03036 Chromosome and associated proteins [BR:
pco03036
]
PHACADRAFT_210427
Transcription machinery [BR:
pco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
PHACADRAFT_210427
Spliceosome [BR:
pco03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
PHACADRAFT_210427
Complex B
PHACADRAFT_210427
Complex C
U2 SnRNP specific factors
PHACADRAFT_210427
Chromosome and associated proteins [BR:
pco03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
PHACADRAFT_210427
TFTC complex
PHACADRAFT_210427
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
18912966
NCBI-ProteinID:
XP_007397316
JGI:
Phaca1_210427
UniProt:
K5VSY3
LinkDB
All DBs
Position
Unknown
AA seq
1213 aa
AA seq
DB search
MHLYNLTLQPSTTISQAIVGNFSGARQQEIIVSRGTRLELLRPDVQTGKVSTVVTSDVFG
SIRSLTAFRLTGGTKDYAIVGSDSGRIVILDYDPKTSSFVKVHQETYGKSGARRIVPGQY
LATDPKGRSVMIAATEKAKLVYILNRDAAANLTISSPLEAHKNNAIIHHIVGLDVGFENP
TFAALEVDYSESDQDPTGEAFNNAEKLLTYYELDLGLNHVVRKWSEPTDPRANLLVQVPG
GQLASSDRYDGPSGVLVCCEDHIIYRHMDAPQHRVPIPRRRHPLEDKERGLIITAAVMHK
MKGAFFFLLQSEEGDLYKVTIEHEEQDVKALKIKYFDTVPVASSLCILKSGFLFVAAEFG
NHHLYQFQKLGDDDNEPEFSSTMYPNFGMANPAISLPPAYFSPRGLDNLTLVDELESLDP
VVDAKVLNLLPNSDSPQIFAACGRGGRSSLRMLRHGLEVEEVVSSDLPGIPNAVWTTKLR
EDDPFDSYIILSFVNGTLVLSIGETIEEVQDTGFLSSSPTLAVQQLGADALLQVHPHGIR
HVLVDRRVNEWRVPQGKTIVCATTNRRQVVVALSSAELVYFELDLEGQLNEYQERKAMGS
TVLALSVGEVPEGRQRTPFLAVGCEDQTVRIVSLDPESTLETISLQALTAPPSAICIADM
LDAGINKVQPTTFVNIGLQNGVLLRTVLDPINGQLTDTRTRFLGTRPIKLVRVQIQRNPG
ILALSSRSWLNYTHQNLMHFTPLIFDNLDYAWSFSAELCPEGLIGISGSVLRIFQIPKLG
TKLKQDSIPLSYTPRKMIVHPTNGFFYMIEGDHRVMGEEAKQKKIEELRQQGKQVDEEML
NLPPEVFGRPKAPAGTWASGIRIVSPVDAQTVNFIPLDNNEAAFSIAVVPFTARGGELTL
VVGTAQDTFLAPRSCTSGFLRTYRFLDDGRDIELLHKTETNDVPLAIMAFQGRLAAGIGK
ALRIYDIGKKKLLRKVESKNFSNAIVTLNTQGSRIIVGDMQESIFYAVYKPPENRLLIFA
DDAQPRWITAVTMIDYNTVAAGDRFGNVFVNRLDPKISDQVDDDPTGAGILHEKGILMGA
PHKTAMIAHFHVGDIVTSIHKVSLVAGGRELLLYTGLHGTVGILVPFVSKEDVDFISTLE
QHMRTEQLSLVGRDHLAWRGYYVPVKAVVDGDLCEMFARLPASKQSSIATELDRTVGEVL
KKLEQLRVTASGF
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgcatctctacaacctcacgctccagccctcgacgaccattagtcaggctatcgttgga
aacttctcgggggcaaggcaacaagaaattattgtctcgcggggcacgcgactcgaactc
cttcgtccggacgtgcagactggtaaagtctcaacagtcgtcacaagtgatgtctttggg
tccattcgctcgttgacggcttttcgattgactggaggcacgaaggactacgcgatcgta
ggctcggactccggccgtatcgtcattctcgattatgaccccaaaacaagcagctttgtc
aaagtccaccaagagacctacggcaagtccggcgcacggcgtatcgttcctggacaatac
ctcgctactgacccaaagggtcgcagcgtcatgattgccgcgacggagaaagcgaagctc
gtgtacattctcaaccgcgatgctgccgccaacctcaccatttcctcaccgctcgaggct
cataagaataatgccatcattcatcacattgtgggcctggacgttggctttgaaaaccca
acattcgccgcactggaggtggattactctgagtcggaccaagacccgactggagaggcg
ttcaacaacgcagaaaagctcttaacttactacgaattggatcttggactcaatcacgtt
gtgcgcaaatggagcgaacccactgacccacgtgcaaacctcctcgtgcaggtgccggga
gggcagctagcctcttccgaccgctacgatggcccctctggtgtgttagtatgctgtgaa
gatcatatcatctatcgacacatggatgcccctcagcaccgagtgcccattccccgccgg
cggcatccattagaggataaggagcgtggtctcatcataactgcggcagtcatgcacaag
atgaagggcgcgttcttcttcttgctgcaaagtgaggagggcgacctctacaaggtaaca
atcgagcacgaagagcaggatgtcaaagccttgaagatcaaatacttcgacactgtgcct
gttgcttcaagtctctgcatcttgaaatccggtttcctatttgttgcggcagagtttggc
aaccatcatctctaccagttccagaaactcggagatgacgacaacgagcccgaattctcc
tctactatgtacccgaactttggcatggcaaaccccgctatctctcttcctcctgcatac
tttagccctcgtggtctcgacaacctgacgctggttgatgaacttgagagcctggatccc
gtcgttgacgcgaaggttctcaacctcctacccaattctgattcaccgcaaattttcgca
gcttgcggacgcggtggtagaagctctctgcgaatgctgagacatggtctcgaggtcgaa
gaagtcgtcagctcagatctccctggtattccgaacgccgtttggacaacgaagcttcgg
gaagatgatccattcgactcgtacattattctgtccttcgtcaatggcactctcgtcctt
tcaatcggtgagacaatcgaagaagtgcaagatacaggcttcctctcctcgtcccccaca
cttgccgttcagcaactcggcgcagatgctctcctgcaagtgcaccctcatggtatccga
catgtactggtggatcgccgtgttaacgagtggcgtgtgccgcaaggcaagacgatcgtt
tgcgccaccaccaatcgtcggcaagtcgttgtcgctctgagcagtgccgagcttgtctac
ttcgaactcgacttggagggtcagttgaacgagtaccaggagcggaaagccatgggcagc
accgtccttgcgctgagtgtcggtgaggtgcctgaaggcaggcagcgcacgccattcctc
gctgtcggatgcgaggaccaaacggtgcgcatcgtgtccctcgaccccgagagcacgctc
gagacgatcagtctgcaagcgttgacggcgcccccgtctgcaatctgcattgccgacatg
ttggatgctggtatcaacaaggttcagccgacaacttttgtaaacatcggcttacaaaac
ggcgtgctgctgaggacggtgctcgaccctatcaatggccagctgactgacacgcgaacg
aggttcttgggaacgcgccccattaaacttgttcgcgtgcagatacagaggaaccctggc
attctcgctctctcgtcccggtcatggttaaactacacccaccagaaccttatgcatttc
acacctctgatcttcgacaatctcgattacgcttggagcttctccgcggaactctgcccg
gagggtctcattggtatctcagggagcgttctgagaattttccaaattcctaagctgggt
acgaagctcaagcaggactccattcctctctcatacacaccgcgcaagatgattgtgcac
cctacgaacgggttcttctacatgatcgaaggcgaccatcgggttatgggagaggaggcg
aaacagaagaagatcgaggagctgaggcagcaagggaagcaagttgacgaagagatgctg
aaccttcctccagaagtgtttggtcggccaaaagcacctgcgggcacatgggcgtcgggt
atccgtatcgtcagtcccgttgatgcacaaacggtcaatttcataccgctcgacaacaac
gaggccgcgttctcgatagctgtcgtgccattcacggcccgcggaggcgaattgaccttg
gttgtcggtactgctcaagacacattcctcgcaccacgttcatgcacgagtggcttcctg
cgtacctaccggttcttggatgatggtcgggacattgagttgctgcacaaaacggagacg
aatgacgttccactcgctatcatggccttccaaggtcgcctggctgctggtattggcaaa
gctttgagaatctacgatatcggaaagaaaaagctcctgcgcaaggtcgagagcaagaac
ttttctaacgcaatcgtaacgctgaatacgcaaggttcgcgcatcattgttggtgacatg
caagagtcgattttctatgccgtctacaagccaccagaaaaccgcttgctcattttcgcc
gacgatgcccagccgcgctggattaccgctgtcacgatgatcgactacaacactgtcgcc
gccggtgaccgcttcggcaatgtcttcgtgaaccgactcgaccccaagatcagtgaccag
gtcgacgacgacccaacaggcgcgggcatcctgcacgagaagggcatcctcatgggcgcg
ccgcacaagacggcgatgatcgcgcactttcacgtcggcgacatcgtgacgtcgattcac
aaggtctcgctcgtcgcgggcggacgcgagctgttgctctacaccgggctgcacggcacg
gtcggcatcctcgtgccgttcgtctcgaaggaggacgtcgacttcatctcgacgctcgag
cagcacatgcgcacggagcagctcagcctcgtcgggcgcgaccacctcgcatggcgcggg
tactacgtgcctgtcaaggctgtcgtcgacggcgacctctgtgagatgttcgcgcgtctg
ccggcgtcgaagcagagctcgatcgcgaccgagctagaccgcaccgtcggtgaggtgctc
aagaagctcgagcaactccgggtcactgcgagcgggttctag
DBGET
integrated database retrieval system