Phasianus colchicus (Ring-necked pheasant): 116235731
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Entry
116235731 CDS
T07365
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03013
Nucleocytoplasmic transport
pcoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116235731 (UPF1)
03015 mRNA surveillance pathway
116235731 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoc03019
]
116235731 (UPF1)
Enzymes [BR:
pcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116235731 (UPF1)
5.6.2.5 RNA 5'-3' helicase
116235731 (UPF1)
Messenger RNA biogenesis [BR:
pcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116235731 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
116235731 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116235731
NCBI-ProteinID:
XP_031459931
Ensembl:
ENSPCLG00000012283
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGAGQAGPGQAQG
APGAGQGPAGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQ
THDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQ
KNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacacggaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcactctc
cccagccagacccaaaccccgcccggagcggggcaggcggggcccggccaggcccagggc
gctccgggagcggggcagggccctgcaggccccatcgaggcccaggttaatggacctgat
ggcattctgcagaacggagcagtggacgataacgtcgctaaaaccagccagcttctggca
gagttgaactttgaagaagatgaagaagatacttactacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcctgtgtggtttactgcaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgttaatcacctggtg
agagcaaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcctg
gaatgttacaactgcggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctctgcaggcagccatgtgcaagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcgtgg
ctggtaaagattccatctgagcaggaacagctgagagcacgtcagattacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatctgcaactcttgaggacttagaa
aagcctggtgttgacgaagagccacagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaagcttaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaataagaaaaga
attgcttatttcactcttccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtataaaggagacctggcccctttgtggaaaggaattggccatgttatc
aaagttcctgataattatggtgatgagattgccatcgagctgaggagcagcgttggagcc
cctgtggaggttactcataacttccaagtggattttgtgtggaagtctacttcgtttgac
agaatgcagagtgctttaaaaacatttgctgtggatgagacttcggtgtcaggatacatc
tatcacaaactgttaggccatgaggtggaagatgtaattattaaatgccagttgccaaag
cgttttacagcacaaggacttcctgatctcaaccattctcaggtttatgctgtgaagacc
gtcctgcagcgtcctctgagccttatccagggtccccctggtactggaaaaacagtgaca
tcagctaccattgtctatcatctggctagacagggcaatgggcctgtgttagtttgtgct
ccaagtaacattgctgtagatcagttgacagagaagatccatcagactggtctgaaagtg
gttcggctgtgtgctaaaagccgtgaggcaattgactcacctgtatccttcttggcactg
cataaccagatcagaaacatggatagcatgccagagcttcagaagctgcaacagcttaaa
gatgaaactggagaactgtcatctgctgatgagaaacgctaccgtgcactgaaacgaaca
gcagagcgtgaattgctcatgaatgcagatgtgatctgttgcacgtgtgtgggagctggt
gatccaaggcttgcaaaaatgcagttccgctccattttgattgatgaaagcacccaggcc
actgagccagagtgcatggtgccagttgtgctgggagcaaagcagcttattcttgtaggt
gaccactgccagcttggtcctgttgtgatgtgtaagaaagctgccaaggcaggcctgtct
cagtccctgtttgagaggctggtggtgctggggattcgccccatccgcctgcaggtgcag
taccgcatgcaccctgccctgagtgctttcccatccaacatcttctatgagggttcgctc
cagaatggtgtcactgcagctgaccgtgtgaagaaagggtttgacttccagtggccacag
ccagataagccaatgtttttctatgttacacaaggacaggaagaaatcgccagctcaggc
acctcttatttgaacagaacggaagctgccaatgtggagaagataactacaaagcttttg
aaagctggtgccaaacctgatcagattggcattattactccttatgaaggccaacgatcc
tatctggtgcagtacatgcagttcagtggttccttgcatacaaaactttaccaggaagta
gaaattgcaagcgtggatgccttccaaggacgagagaaggactttattatcctgtcttgt
gtgagggccaacgaacaccaagggataggatttctgaatgaccccagacgtcttaatgtg
gctcttacaagagcaaggtatggagtaattattgttgggaacccaaaagctctgtctaaa
caaccactttggaatcacctgctgaattactacaaggagcagaaggttttggtggaggga
ccactgaataacctccgggagagcctcatgcaattcagcaagccccgaaaacttgtcaat
accatcaacccaggcgcccgcttcatgaccactgccatgtatgatgcacgtgaagctatt
attccaggatccgtctatgaccggagcagtcaagggcgcccatccaacatgtacttccaa
acccacgaccagatcgggatgatcagtgcaggccccagccacgtcactgctatgaacatt
cccatccccttcaacctcgtgatgcccccaatgccaccaccagggtacttcgggcaggcc
aacggcccagctgcaggacgtggggcacccaaagggaagactggtcgtggtgggcgccag
aaaaatcgttttgggattcctggaacgagtcagtcaaaccttcccaatagccaggcgagc
caagacgtggtgtcccagcctttctcccagggtccactgactcaggggtatatctccatg
agtcagccatctcagatgagtcagcctgggctctcccaaccagaattatcacaggacagt
taccttggtgatgagtttaagtctcagattgacgtggcgctgtcacaggactccacctac
cagggggaacgcgcgtatcaacatggcggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
