Phasianus colchicus (Ring-necked pheasant): 116239188
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Entry
116239188 CDS
T07365
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116239188 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcoc03400
]
116239188 (LIG4)
Enzymes [BR:
pcoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116239188 (LIG4)
DNA repair and recombination proteins [BR:
pcoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116239188 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
SKA1
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
116239188
NCBI-ProteinID:
XP_031465090
Ensembl:
ENSPCLG00000015702
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPASQLSPKRTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRRFHSALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAVKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTVEQVNELLDAIANNNATKNKGLVKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMINDQKLGHESLSKRYKILSNVFTPVTGRIHVVHKKSASTRKEVI
DALNEAIDNREEGIMIKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPAPNEKPTAFHSLCRIGSGYTMKELYDLGLKLAKHWKPYNRKDPP
CNILCGTEKPEMYIEPCNSVIVQVKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDMLKHLRSRAEGKLASKHLYIDEYDEPHEKKRRTVPKVKKVIGIAEQFKAPDLSNVNKV
SSVFEDVEFCVMTGTGKYSKSELESKIAECGGSVVQNPGPDTYCVIVGAENVRVKNIIAS
NKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTADTDVAQLK
EVFSRVKNSKKLPLDLIAELEERYSWNSCQLCIFRGSTIYVDYYTIINKPSTKIHGTRLS
VRALELRFYGAKVVTLLEEGVSHVVIGEDHSRVKEVKALRRTFGKKFKIVSELWVTESIK
EGAPKNENQFLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcaccagcctcacagctttctcctaaaagaacagtggcctcgcacgtgcct
tttgcagacctgtgttccaccctggagcgaatacagacgtgtaaatcccggccagagaaa
accaagtacttcaaggatttcttagattcctggaggagattccacagtgctctccatcaa
aaagagaaagatgtcaccgattctttttatcctgctatgcggcttattcttccgcagctg
gaaagggagaggatggcgtatggaattaaggaaaccatgcttgcaaagctttacattgag
ctgcttaacttaccaaaagatggaaaggatgctgtcaagcttttaaattacaggacgccc
actggttcacgtggagatgctggagactttgcaatgattgcatactttgtgttaaaaccc
cgaagccctaagcaaggcaggttgactgtagagcaggtcaatgaactgctggatgccatt
gcaaacaacaatgctactaaaaacaagggactggtaaagaagagccttcttcagttaatt
acccaaagcacagcactcgagcaaaagtggctcatccggatgattataaaggatctaaaa
cttggtgttagtcaacaaactatattttcaatttttcatcctgatgctgctgaattacac
aatgtaacaacagatttggaaaaagtttgtaggcagctgcatgacccctctgtctcactt
agcgatgtttctatcatgttattttctgcctttaaaccaatgctcgctgctattgctgat
gtccagcaaattgagaagcagatgaataaccaggtattctacatagaaactaaactggat
ggtgaacgtatgcagatgcacaaagatggtgatgtatataaatatttttccagaaacggg
tttgactatactcagcagtttggtgcttccccccttgatggctcattaacaccatttatt
cataatgtatttaaaagtgacatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaaacacaaacctttatgcaaaaaggaaacaaatttgacatcaaaagaatggta
gaggactctgatctgcagacctgcttctgtgtgtttgatgtattaatgataaatgatcag
aagttgggtcatgaatccctgagcaaaagatacaagatcttaagtaatgtatttacccca
gtaacaggcaggatacatgttgtacataaaaaaagtgccagcacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatgataaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccggaatatgtc
aatgggctgatggatgagctagatcttcttattgttggtggctactggggaaaaggctca
cgtggtgggatgatgtctcattttctgtgtgctattgcagagactccagctccaaatgaa
aaacctactgctttccactctctttgtcgtattggctctggctacactatgaaggaatta
tatgatctgggtttgaaactggctaaacattggaagccttacaataggaaggaccctccc
tgtaacattttgtgtggcactgaaaaacctgaaatgtacattgagccttgcaactctgtc
atagttcaggtcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgaaaaaataagagaggacaaagaatggtatgaatgcatgact
ttggacatgctaaaacatcttagaagcagagcagaagggaagctggcatccaagcaccta
tatattgatgaatatgatgagccacacgagaagaaaaggagaactgtaccaaaggtgaag
aaggtaattggaatagctgagcagtttaaagctcctgatctttctaatgtcaacaaagtt
tccagtgtgtttgaggatgtagaattttgtgttatgacaggaacaggaaagtactccaag
tctgaactggaaagcaaaatagctgaatgtggtggcagtgtggtacagaaccctggacct
gatacttactgtgtcattgtaggagctgagaatgtcagagttaaaaacatcattgcttcc
aacaaatatgatgtggtgaaagcagagtggcttcttcagtgttttcagtccaaaatgctg
gtaccttggcagccagcctttatgattcacatgtctcctgacacaagagaacattttgct
cgtgagtatgattgctatggagacagctacacagcagatacagatgttgcacaactcaag
gaagtgttctcaagagtgaagaatagtaagaagttgcctttggacttgattgctgagtta
gaagaacggtattcatggaacagctgtcaactgtgtatattcagaggaagcactatttat
gtggactattacactattattaacaagcccagtaccaaaatccatggcacaagactatca
gttagagctttggagctccgtttttacggtgcaaaagtagttactcttcttgaggaaggt
gtgtcccatgttgttataggagaagatcattcccgggtaaaagaggtgaaagctctcagg
agaacgtttgggaaaaaatttaaaattgtatctgagctgtgggtaacagagtcaattaag
gaaggagccccaaagaatgaaaatcagttcttaatttaa
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