Pseudomonas coronafaciens pv. oryzae: POR16_14780
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Entry
POR16_14780 CDS
T08147
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
POR16_14780 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcof03400
]
POR16_14780 (ligD)
Enzymes [BR:
pcof01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
POR16_14780 (ligD)
DNA repair and recombination proteins [BR:
pcof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
POR16_14780 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGL57510
LinkDB
All DBs
Position
complement(3296767..3299346)
Genome browser
AA seq
859 aa
AA seq
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MAKPASEYTRKRNFDVTSEPAESQRKGKTKPGALSFVVQKHDARNLHYDFRLELDGTLKS
WAVPKGPSLDPKQKRLAVHVEDHPLDYAGFEGSIPKGQYGGGDVIVWDRGIWQPHGDPQK
TYSEGKLKFTLVGEKLTGEWALVRTRLKGSGSKEQWLLIKEKDAIARPADEYDITQEQPQ
SVISGAHVGAGRSTPDPAKGKAKAAAPKAATKKKPVKSKTVFPDALSPQLATLVDAPPAG
EWLYEIKFDGYRMLTRIQKGEVCLFTRNGNDWTERLPELVKALGALKLQDSWFDGEAVVL
DEQGLPDFQGLQNAFDEGHSKKILYYLFDMPFLSGEDLRELPLEQRRDALKQVLDSQRSR
LLRYSDDFQAGHQDIVASAAAMGLEGVIGKRAGSAYVGKRNADWIKLKCRLRQEFVIVGY
TAPQGSRSAFGALLLAVNDDKQGLVYAGRVGTGFTEQTLKQLQKKLQPLQREGSPLGSKL
SSAQARGVQWVEPQQVCEVEFAQWTREGILRQAAFIGLRSDKPASDVVREEAQPAKVADH
TKAASTAPRTGKKTAKGRVDVAGTGISHPDRVIDSKTGTKKVELAQFYQSIAEWILPHLN
KRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRTLDPGHAALMEIDSPEALVGAVQM
GTIELHTWAATRDRIETPDHFVLDLDPDPDPDPALPWRSMIEATQMVLAVLEELGLEAFL
KTSGGKGMHIIVPLARQADWGTVKAFSKAIAEFVSRQLPERFTATMGPKNRVGKIFIDYL
RNTRGGSTVTAYSVRARPGLPVSVPIALDELAGLTSSAQWDINNLEARLNQLKDDPWAGY
SNRRKITQKMWKQLGAKRP
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccagccagtgagtacacgcgcaagcgcaattttgacgttacctctgaaccc
gccgagagccagcgcaaaggcaagacgaagcccggcgcgctgagtttcgtggttcaaaaa
catgacgcgcgcaacctgcactatgactttcgactggagctggatggcacgctcaaaagc
tgggcagtgcctaaaggtccgagtctggatccgaagcaaaaacgtctggctgtgcatgtc
gaagatcacccgctggattacgcaggtttcgagggcagcattccaaaaggtcaatatggc
ggaggtgacgtcatcgtctgggacaggggcatctggcagcctcatggcgatccgcaaaag
acctattcggaaggcaaactcaaattcacgctggtcggtgaaaagctcactggcgaatgg
gccttggtgcgcactcgcctcaagggcagcggcagcaaggagcaatggctgctgatcaag
gaaaaggacgcgatcgcccgccctgctgacgagtacgacattacacaggagcaaccgcaa
agcgtgatcagcggcgcgcatgtcggagcaggtcgttcaacgcctgaccctgcgaaaggt
aaagccaaggctgctgcaccgaaggccgcaacgaagaagaaaccagtcaaatcgaaaacg
gttttcccggacgcgctttctcctcagcttgcgacattggtggacgccccgcctgcaggt
gaatggctgtacgagatcaagttcgacggctaccgcatgttgacgcgaatccagaagggt
gaagtgtgtttgttcacccgtaacggcaacgactggaccgagcgtctgccagaactggtc
aaggcgctcggtgccttaaagttgcaggacagctggttcgatggtgaggctgtggttctg
gacgagcaagggctgcctgactttcaaggcctgcagaatgccttcgacgaagggcacagt
aaaaagatcctgtattaccttttcgacatgccgtttctgagtggcgaagacttgcgcgag
ttgccgctggagcagcgtcgtgatgcgctgaaacaagtgctcgatagccagcgcagccgc
ttgttgcgttactcggatgactttcaggccgggcatcaggacattgtggccagcgccgcc
gcgatggggcttgagggcgtgattggcaagcgtgccggcagtgcgtatgtcggcaagcgc
aatgccgactggatcaagctcaagtgccgcttgcgtcaggagttcgtgatcgttggctat
accgcgccccagggcagtcgctcggcgttcggcgctttgctgctggcagtcaacgacgat
aaacagggtctggtatacgccgggcgtgtaggcaccggtttcactgagcaaaccctgaag
cagttgcaaaaaaagctgcaaccgctgcagcgcgaaggttcgccactgggcagcaagctg
agctcggcgcaggcgcgcggggtgcaatgggtggagccgcagcaggtctgtgaagttgaa
ttcgctcagtggacgcgtgagggtatattgcgtcaggccgcttttatcggtttgcgcagt
gacaagccagccagcgacgtggtgcgcgaagaggcgcagccggcgaaggtcgccgatcac
accaaggctgcatccactgcgccacgcaccggaaaaaaaactgccaagggcagggtggac
gtggcgggcacgggtatcagccatccggatcgtgttatcgacagcaagaccggcacgaag
aaggttgagcttgcgcagttttaccagtccattgccgagtggattctgccgcacctgaac
aagcgtccggtggccctgttgcgttgtccggaaggcatcgacggcgagcagttttttcaa
aaacacgccgaacacctggccatcccgcacatccggcaactggatcgcaccctcgacccc
ggccacgctgccctgatggaaatcgattcgcccgaggcgctggtcggtgcagtgcaaatg
ggcaccatcgagctgcacacgtgggccgcgacacgcgacaggatcgagacccccgatcat
ttcgtgctggaccttgaccctgaccctgaccctgaccctgcgttgccttggcgcagcatg
atcgaagccacgcagatggttctggcggtgctggaagagctcgggctcgaggccttcctc
aagaccagcggtggcaaaggcatgcacatcatcgtgccattggcacgccaggctgactgg
ggcactgtcaaagcgttctcaaaagctatcgccgagtttgtcagccgccagttgcccgag
cgctttactgccacgatggggccgaagaaccgggtcgggaaaatcttcatcgattacctg
cgcaacactcgcggcggcagcacggtcaccgcctattcggtacgcgcccggccaggcttg
ccggtttcggtgccgattgcgctggatgagctggccgggctgacgtcgtctgcgcagtgg
gacatcaacaatcttgaagcgcgtctgaatcagctcaaggacgatccgtgggcgggttac
agcaaccgccgcaagatcacccagaagatgtggaaacaactgggtgccaagcggccttga
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